Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0628 and nosA are separated by 206 nucleotides nosA and hrpB are separated by 208 nucleotides
SO0628: SO0628 - GGDEF domain protein (NCBI ptt file), at 653,468 to 655,654
SO0628
SO0630: nosA - TonB-dependent receptor (NCBI ptt file), at 655,861 to 657,867
nosA
SO0632: hrpB - ATP-dependent helicase HrpB (NCBI ptt file), at 658,076 to 660,583
hrpB
Position (kb) 655
656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 654.997 kb on - strand, within SO0628 at 655.004 kb on + strand, within SO0628 at 655.050 kb on + strand, within SO0628 at 655.091 kb on - strand, within SO0628 at 655.105 kb on + strand, within SO0628 at 655.119 kb on + strand, within SO0628 at 655.257 kb on - strand, within SO0628 at 655.326 kb on - strand, within SO0628 at 655.490 kb on + strand at 655.498 kb on - strand at 655.498 kb on - strand at 655.511 kb on - strand at 655.577 kb on + strand at 655.585 kb on - strand at 655.623 kb on + strand at 655.631 kb on - strand at 655.638 kb on + strand at 655.647 kb on - strand at 655.758 kb on - strand at 655.899 kb on - strand at 655.934 kb on + strand at 656.022 kb on - strand at 656.172 kb on - strand, within nosA at 656.271 kb on + strand, within nosA at 656.304 kb on + strand, within nosA at 656.356 kb on - strand, within nosA at 656.578 kb on + strand, within nosA at 656.578 kb on + strand, within nosA at 656.586 kb on - strand, within nosA at 656.590 kb on + strand, within nosA at 656.609 kb on - strand, within nosA at 656.785 kb on - strand, within nosA at 656.828 kb on + strand, within nosA at 656.860 kb on - strand, within nosA at 656.903 kb on - strand, within nosA at 657.016 kb on + strand, within nosA at 657.022 kb on + strand, within nosA at 657.116 kb on - strand, within nosA at 657.119 kb on + strand, within nosA at 657.149 kb on - strand, within nosA at 657.178 kb on + strand, within nosA at 657.178 kb on + strand, within nosA at 657.250 kb on - strand, within nosA at 657.324 kb on + strand, within nosA at 657.324 kb on - strand, within nosA at 657.398 kb on - strand, within nosA at 657.421 kb on + strand, within nosA at 657.421 kb on + strand, within nosA at 657.421 kb on + strand, within nosA at 657.421 kb on + strand, within nosA at 657.422 kb on + strand, within nosA at 657.422 kb on + strand, within nosA at 657.429 kb on - strand, within nosA at 657.429 kb on - strand, within nosA at 657.449 kb on + strand, within nosA at 657.569 kb on - strand, within nosA at 657.760 kb on - strand at 657.779 kb on - strand at 657.810 kb on + strand at 657.861 kb on + strand at 658.022 kb on + strand at 658.022 kb on + strand at 658.030 kb on - strand at 658.030 kb on - strand at 658.142 kb on - strand at 658.284 kb on + strand at 658.305 kb on + strand at 658.317 kb on + strand at 658.317 kb on + strand at 658.317 kb on + strand at 658.317 kb on + strand at 658.317 kb on + strand at 658.317 kb on + strand at 658.325 kb on - strand at 658.325 kb on - strand at 658.325 kb on - strand at 658.325 kb on - strand at 658.325 kb on - strand at 658.344 kb on - strand, within hrpB at 658.459 kb on + strand, within hrpB at 658.485 kb on + strand, within hrpB at 658.491 kb on + strand, within hrpB at 658.499 kb on + strand, within hrpB at 658.514 kb on - strand, within hrpB at 658.584 kb on + strand, within hrpB at 658.584 kb on + strand, within hrpB at 658.594 kb on + strand, within hrpB at 658.594 kb on + strand, within hrpB at 658.594 kb on + strand, within hrpB at 658.646 kb on - strand, within hrpB at 658.657 kb on - strand, within hrpB at 658.670 kb on + strand, within hrpB at 658.670 kb on + strand, within hrpB at 658.678 kb on - strand, within hrpB at 658.693 kb on - strand, within hrpB at 658.693 kb on - strand, within hrpB at 658.693 kb on - strand, within hrpB at 658.772 kb on + strand, within hrpB at 658.777 kb on + strand, within hrpB at 658.777 kb on + strand, within hrpB at 658.777 kb on + strand, within hrpB at 658.777 kb on + strand, within hrpB at 658.785 kb on - strand, within hrpB at 658.852 kb on + strand, within hrpB at 658.852 kb on + strand, within hrpB at 658.852 kb on + strand, within hrpB at 658.855 kb on - strand, within hrpB at 658.860 kb on - strand, within hrpB at 658.860 kb on - strand, within hrpB
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 654,997 - SO0628 0.70 -0.5 655,004 + SO0628 0.70 -0.3 655,050 + SO0628 0.72 -0.5 655,091 - SO0628 0.74 -0.5 655,105 + SO0628 0.75 -0.0 655,119 + SO0628 0.75 -0.0 655,257 - SO0628 0.82 -0.5 655,326 - SO0628 0.85 +0.8 655,490 + -1.3 655,498 - -0.0 655,498 - -0.1 655,511 - +1.0 655,577 + +0.0 655,585 - -0.4 655,623 + +1.2 655,631 - +0.3 655,638 + -0.9 655,647 - +0.3 655,758 - -0.9 655,899 - -0.4 655,934 + +0.5 656,022 - +0.3 656,172 - nosA SO0630 0.15 -0.5 656,271 + nosA SO0630 0.20 -0.4 656,304 + nosA SO0630 0.22 -0.5 656,356 - nosA SO0630 0.25 -0.4 656,578 + nosA SO0630 0.36 -0.6 656,578 + nosA SO0630 0.36 -1.0 656,586 - nosA SO0630 0.36 +0.4 656,590 + nosA SO0630 0.36 -0.7 656,609 - nosA SO0630 0.37 -0.8 656,785 - nosA SO0630 0.46 +0.2 656,828 + nosA SO0630 0.48 +0.9 656,860 - nosA SO0630 0.50 -0.0 656,903 - nosA SO0630 0.52 -1.1 657,016 + nosA SO0630 0.58 -0.3 657,022 + nosA SO0630 0.58 -0.8 657,116 - nosA SO0630 0.63 -0.8 657,119 + nosA SO0630 0.63 +0.6 657,149 - nosA SO0630 0.64 -1.1 657,178 + nosA SO0630 0.66 +0.4 657,178 + nosA SO0630 0.66 -0.7 657,250 - nosA SO0630 0.69 -0.7 657,324 + nosA SO0630 0.73 +2.6 657,324 - nosA SO0630 0.73 -0.5 657,398 - nosA SO0630 0.77 -0.5 657,421 + nosA SO0630 0.78 +1.3 657,421 + nosA SO0630 0.78 +0.7 657,421 + nosA SO0630 0.78 +0.4 657,421 + nosA SO0630 0.78 -0.1 657,422 + nosA SO0630 0.78 -1.0 657,422 + nosA SO0630 0.78 -1.0 657,429 - nosA SO0630 0.78 +0.2 657,429 - nosA SO0630 0.78 +0.2 657,449 + nosA SO0630 0.79 -1.6 657,569 - nosA SO0630 0.85 -1.3 657,760 - +0.2 657,779 - -0.2 657,810 + +0.2 657,861 + -0.5 658,022 + -0.5 658,022 + -0.8 658,030 - -1.5 658,030 - -1.1 658,142 - -0.3 658,284 + +0.0 658,305 + -0.3 658,317 + +3.4 658,317 + -0.1 658,317 + +0.2 658,317 + +0.3 658,317 + -1.2 658,317 + -0.3 658,325 - -0.5 658,325 - +0.8 658,325 - +0.3 658,325 - +0.5 658,325 - -1.7 658,344 - hrpB SO0632 0.11 +1.2 658,459 + hrpB SO0632 0.15 +0.1 658,485 + hrpB SO0632 0.16 -1.1 658,491 + hrpB SO0632 0.17 -0.1 658,499 + hrpB SO0632 0.17 -0.1 658,514 - hrpB SO0632 0.17 +0.5 658,584 + hrpB SO0632 0.20 -1.2 658,584 + hrpB SO0632 0.20 -0.1 658,594 + hrpB SO0632 0.21 -1.0 658,594 + hrpB SO0632 0.21 +0.3 658,594 + hrpB SO0632 0.21 -2.8 658,646 - hrpB SO0632 0.23 -1.5 658,657 - hrpB SO0632 0.23 +0.9 658,670 + hrpB SO0632 0.24 +0.1 658,670 + hrpB SO0632 0.24 -0.5 658,678 - hrpB SO0632 0.24 +0.4 658,693 - hrpB SO0632 0.25 -0.7 658,693 - hrpB SO0632 0.25 +1.0 658,693 - hrpB SO0632 0.25 -0.4 658,772 + hrpB SO0632 0.28 +0.4 658,777 + hrpB SO0632 0.28 +0.3 658,777 + hrpB SO0632 0.28 +0.2 658,777 + hrpB SO0632 0.28 -1.8 658,777 + hrpB SO0632 0.28 -0.9 658,785 - hrpB SO0632 0.28 -2.0 658,852 + hrpB SO0632 0.31 +0.7 658,852 + hrpB SO0632 0.31 +1.0 658,852 + hrpB SO0632 0.31 -0.1 658,855 - hrpB SO0632 0.31 -2.1 658,860 - hrpB SO0632 0.31 +1.0 658,860 - hrpB SO0632 0.31 +0.4
Or see this region's nucleotide sequence