Experiment: m.b. syringaldehyde 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09700 and PGA1_c09710 are separated by 571 nucleotides PGA1_c09710 and PGA1_c09720 are separated by 28 nucleotides
PGA1_c09700: PGA1_c09700 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC, at 995,838 to 996,773
_c09700
PGA1_c09710: PGA1_c09710 - putative outer membrane assembly lipoprotein, at 997,345 to 998,193
_c09710
PGA1_c09720: PGA1_c09720 - DNA repair protein RecN, at 998,222 to 999,868
_c09720
Position (kb) 997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 996.721 kb on + strand at 996.734 kb on - strand at 996.909 kb on + strand at 996.917 kb on - strand at 996.962 kb on - strand at 996.964 kb on + strand at 997.106 kb on + strand at 997.134 kb on - strand at 997.157 kb on - strand at 997.157 kb on - strand at 997.171 kb on + strand at 997.180 kb on - strand at 997.190 kb on + strand at 997.190 kb on + strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.198 kb on - strand at 997.208 kb on + strand at 997.208 kb on + strand at 997.208 kb on + strand at 997.208 kb on - strand at 997.216 kb on - strand at 998.093 kb on + strand, within PGA1_c09710 at 998.093 kb on + strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.187 kb on - strand at 998.232 kb on + strand at 998.257 kb on - strand at 998.296 kb on - strand at 998.394 kb on + strand, within PGA1_c09720 at 998.456 kb on + strand, within PGA1_c09720 at 998.556 kb on + strand, within PGA1_c09720 at 998.643 kb on + strand, within PGA1_c09720 at 998.677 kb on + strand, within PGA1_c09720 at 998.897 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.950 kb on - strand, within PGA1_c09720 at 998.964 kb on + strand, within PGA1_c09720 at 999.030 kb on - strand, within PGA1_c09720 at 999.096 kb on - strand, within PGA1_c09720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM remove 996,721 + -0.0 996,734 - -0.2 996,909 + -0.7 996,917 - -1.1 996,962 - -0.5 996,964 + -1.3 997,106 + -0.4 997,134 - -0.5 997,157 - -1.6 997,157 - -0.3 997,171 + +0.2 997,180 - +0.7 997,190 + -0.5 997,190 + -1.3 997,198 - -0.6 997,198 - -0.9 997,198 - -1.2 997,198 - +0.3 997,198 - +0.7 997,198 - -2.0 997,198 - -1.6 997,198 - +0.6 997,198 - -0.2 997,198 - -0.2 997,198 - -1.0 997,208 + -0.0 997,208 + -0.7 997,208 + -0.8 997,208 - -0.9 997,216 - -0.3 998,093 + PGA1_c09710 0.88 -2.6 998,093 + PGA1_c09710 0.88 -0.9 998,101 - PGA1_c09710 0.89 -2.0 998,101 - PGA1_c09710 0.89 -3.3 998,187 - -1.3 998,232 + +0.5 998,257 - +0.3 998,296 - -1.7 998,394 + PGA1_c09720 0.10 -0.3 998,456 + PGA1_c09720 0.14 -1.1 998,556 + PGA1_c09720 0.20 -1.1 998,643 + PGA1_c09720 0.26 -2.2 998,677 + PGA1_c09720 0.28 -1.7 998,897 + PGA1_c09720 0.41 -1.4 998,942 + PGA1_c09720 0.44 -1.1 998,942 + PGA1_c09720 0.44 +0.1 998,950 - PGA1_c09720 0.44 -0.9 998,964 + PGA1_c09720 0.45 -1.7 999,030 - PGA1_c09720 0.49 +0.4 999,096 - PGA1_c09720 0.53 -0.6
Or see this region's nucleotide sequence