Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_895 and HP15_896 overlap by 1 nucleotides HP15_896 and HP15_897 are separated by 10 nucleotides HP15_897 and HP15_898 are separated by 21 nucleotides HP15_898 and HP15_899 are separated by 73 nucleotides
HP15_895: HP15_895 - serine/threonine protein kinase, at 909,179 to 910,831
_895
HP15_896: HP15_896 - serine/threonine protein phosphatase, at 910,831 to 911,586
_896
HP15_897: HP15_897 - protein containing forkhead-associated domain, at 911,597 to 911,947
_897
HP15_898: HP15_898 - glutamine amidotransferase class-I, at 911,969 to 912,679
_898
HP15_899: HP15_899 - protein YeeN, at 912,753 to 913,478
_899
Position (kb)
911
912 Strain fitness (log2 ratio)
-1
0
1 at 910.620 kb on + strand, within HP15_895 at 910.628 kb on - strand, within HP15_895 at 910.628 kb on - strand, within HP15_895 at 910.633 kb on - strand, within HP15_895 at 910.642 kb on - strand, within HP15_895 at 910.733 kb on - strand at 910.774 kb on + strand at 910.782 kb on - strand at 911.264 kb on + strand, within HP15_896 at 911.267 kb on - strand, within HP15_896 at 911.270 kb on - strand, within HP15_896 at 911.272 kb on + strand, within HP15_896 at 911.280 kb on - strand, within HP15_896 at 911.290 kb on - strand, within HP15_896 at 911.338 kb on + strand, within HP15_896 at 911.338 kb on + strand, within HP15_896 at 911.343 kb on + strand, within HP15_896 at 911.343 kb on + strand at 911.343 kb on + strand, within HP15_896 at 911.351 kb on - strand, within HP15_896 at 911.351 kb on - strand, within HP15_896 at 911.363 kb on - strand, within HP15_896 at 911.540 kb on - strand at 911.640 kb on + strand, within HP15_897 at 911.734 kb on + strand, within HP15_897 at 912.143 kb on - strand, within HP15_898 at 912.184 kb on - strand, within HP15_898 at 912.317 kb on + strand, within HP15_898 at 912.367 kb on - strand, within HP15_898 at 912.369 kb on + strand, within HP15_898 at 912.496 kb on + strand, within HP15_898 at 912.598 kb on + strand, within HP15_898
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 910,620 + HP15_895 0.87 -0.5 910,628 - HP15_895 0.88 -0.4 910,628 - HP15_895 0.88 +1.1 910,633 - HP15_895 0.88 +0.9 910,642 - HP15_895 0.89 -0.3 910,733 - -0.0 910,774 + +0.2 910,782 - -0.8 911,264 + HP15_896 0.57 +0.1 911,267 - HP15_896 0.58 -0.1 911,270 - HP15_896 0.58 -0.4 911,272 + HP15_896 0.58 +0.6 911,280 - HP15_896 0.59 +1.6 911,290 - HP15_896 0.61 -0.5 911,338 + HP15_896 0.67 -0.3 911,338 + HP15_896 0.67 -0.5 911,343 + HP15_896 0.68 +0.5 911,343 + -0.1 911,343 + HP15_896 0.68 -0.5 911,351 - HP15_896 0.69 +0.3 911,351 - HP15_896 0.69 -0.1 911,363 - HP15_896 0.70 -0.0 911,540 - +0.3 911,640 + HP15_897 0.12 -0.3 911,734 + HP15_897 0.39 -1.6 912,143 - HP15_898 0.24 +1.3 912,184 - HP15_898 0.30 -1.7 912,317 + HP15_898 0.49 +0.9 912,367 - HP15_898 0.56 +0.7 912,369 + HP15_898 0.56 +0.0 912,496 + HP15_898 0.74 +1.2 912,598 + HP15_898 0.88 -0.1
Or see this region's nucleotide sequence