Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_891 and HP15_892 are separated by 8 nucleotides HP15_892 and HP15_893 are separated by 148 nucleotides
HP15_891: HP15_891 - conserved hypothetical protein, at 904,969 to 905,970
_891
HP15_892: HP15_892 - uncharacterized conserved protein UCP029543, at 905,979 to 906,338
_892
HP15_893: HP15_893 - hypothetical protein, at 906,487 to 907,551
_893
Position (kb) 905
906
907 Strain fitness (log2 ratio) -2
-1
0
1
2 at 904.998 kb on + strand at 905.018 kb on - strand at 905.234 kb on + strand, within HP15_891 at 905.288 kb on + strand, within HP15_891 at 905.290 kb on + strand, within HP15_891 at 905.394 kb on + strand, within HP15_891 at 905.718 kb on + strand, within HP15_891 at 905.745 kb on + strand, within HP15_891 at 905.780 kb on + strand, within HP15_891 at 905.989 kb on - strand at 906.023 kb on + strand, within HP15_892 at 906.029 kb on - strand, within HP15_892 at 906.082 kb on - strand, within HP15_892 at 906.169 kb on - strand, within HP15_892 at 906.335 kb on - strand at 906.526 kb on + strand at 906.528 kb on + strand at 906.564 kb on - strand at 906.574 kb on - strand at 906.648 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.670 kb on + strand, within HP15_893 at 906.756 kb on + strand, within HP15_893 at 906.764 kb on - strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.786 kb on - strand, within HP15_893 at 906.789 kb on + strand, within HP15_893 at 907.034 kb on - strand, within HP15_893 at 907.179 kb on - strand, within HP15_893 at 907.256 kb on - strand, within HP15_893 at 907.256 kb on - strand, within HP15_893 at 907.256 kb on - strand, within HP15_893 at 907.290 kb on + strand, within HP15_893
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 904,998 + +1.5 905,018 - +0.4 905,234 + HP15_891 0.26 -0.2 905,288 + HP15_891 0.32 -0.9 905,290 + HP15_891 0.32 +0.2 905,394 + HP15_891 0.42 -0.0 905,718 + HP15_891 0.75 -0.1 905,745 + HP15_891 0.77 -0.6 905,780 + HP15_891 0.81 +0.2 905,989 - -0.3 906,023 + HP15_892 0.12 -0.6 906,029 - HP15_892 0.14 +0.0 906,082 - HP15_892 0.29 -1.8 906,169 - HP15_892 0.53 -0.6 906,335 - -0.3 906,526 + +0.1 906,528 + -0.7 906,564 - -0.3 906,574 - +0.8 906,648 + HP15_893 0.15 +0.9 906,665 + HP15_893 0.17 -0.1 906,665 + HP15_893 0.17 -1.4 906,670 + HP15_893 0.17 -0.8 906,756 + HP15_893 0.25 +0.6 906,764 - HP15_893 0.26 -0.0 906,783 + HP15_893 0.28 +0.5 906,783 + HP15_893 0.28 -1.1 906,786 - HP15_893 0.28 +0.9 906,789 + HP15_893 0.28 -0.1 907,034 - HP15_893 0.51 +1.9 907,179 - HP15_893 0.65 +0.4 907,256 - HP15_893 0.72 +0.9 907,256 - HP15_893 0.72 -0.2 907,256 - HP15_893 0.72 +0.0 907,290 + HP15_893 0.75 +0.5
Or see this region's nucleotide sequence