Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_880 and HP15_881 are separated by 4 nucleotides HP15_881 and HP15_882 are separated by 72 nucleotides HP15_882 and HP15_883 are separated by 86 nucleotides
HP15_880: HP15_880 - oxidoreductase, short chain dehydrogenase/reductase family, at 896,741 to 897,472
_880
HP15_881: HP15_881 - 2',5' RNA ligase, at 897,477 to 898,019
_881
HP15_882: HP15_882 - hydrolase, carbon-nitrogen family protein, at 898,092 to 899,660
_882
HP15_883: HP15_883 - conserved hypothetical protein, at 899,747 to 901,204
_883
Position (kb) 898
899
900 Strain fitness (log2 ratio) -1
0
1
2
3 at 897.129 kb on + strand, within HP15_880 at 897.189 kb on - strand, within HP15_880 at 897.278 kb on + strand, within HP15_880 at 897.281 kb on - strand, within HP15_880 at 897.288 kb on + strand, within HP15_880 at 897.296 kb on - strand, within HP15_880 at 897.326 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.448 kb on - strand at 897.566 kb on + strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.587 kb on + strand, within HP15_881 at 897.646 kb on - strand, within HP15_881 at 897.747 kb on - strand, within HP15_881 at 897.851 kb on - strand, within HP15_881 at 897.918 kb on - strand, within HP15_881 at 897.955 kb on + strand, within HP15_881 at 897.963 kb on - strand, within HP15_881 at 898.144 kb on + strand at 898.238 kb on + strand at 898.246 kb on - strand at 898.246 kb on - strand at 898.411 kb on + strand, within HP15_882 at 898.492 kb on - strand, within HP15_882 at 898.642 kb on + strand, within HP15_882 at 898.643 kb on - strand, within HP15_882 at 898.720 kb on + strand, within HP15_882 at 898.809 kb on + strand, within HP15_882 at 898.908 kb on - strand, within HP15_882 at 898.920 kb on - strand, within HP15_882 at 898.968 kb on + strand, within HP15_882 at 898.968 kb on + strand, within HP15_882 at 899.026 kb on + strand, within HP15_882 at 899.062 kb on + strand, within HP15_882 at 899.094 kb on + strand, within HP15_882 at 899.187 kb on - strand, within HP15_882 at 899.207 kb on - strand, within HP15_882 at 899.241 kb on - strand, within HP15_882 at 899.380 kb on - strand, within HP15_882 at 899.380 kb on - strand, within HP15_882 at 899.380 kb on - strand, within HP15_882 at 899.460 kb on + strand, within HP15_882 at 899.571 kb on + strand at 899.579 kb on - strand at 899.628 kb on + strand at 899.630 kb on + strand at 899.636 kb on - strand at 899.636 kb on - strand at 899.689 kb on - strand at 899.691 kb on + strand at 899.691 kb on + strand at 899.691 kb on + strand at 899.739 kb on - strand at 899.780 kb on + strand at 899.812 kb on + strand at 899.812 kb on + strand at 899.844 kb on - strand at 899.870 kb on - strand at 899.956 kb on - strand, within HP15_883 at 899.972 kb on - strand, within HP15_883 at 899.997 kb on + strand, within HP15_883 at 900.002 kb on + strand, within HP15_883 at 900.002 kb on + strand, within HP15_883 at 900.002 kb on + strand, within HP15_883 at 900.002 kb on + strand, within HP15_883 at 900.010 kb on - strand, within HP15_883 at 900.010 kb on - strand, within HP15_883 at 900.010 kb on - strand, within HP15_883 at 900.224 kb on + strand, within HP15_883 at 900.313 kb on + strand, within HP15_883 at 900.388 kb on - strand, within HP15_883 at 900.388 kb on - strand, within HP15_883 at 900.388 kb on - strand, within HP15_883 at 900.520 kb on + strand, within HP15_883 at 900.660 kb on + strand, within HP15_883
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 897,129 + HP15_880 0.53 -1.0 897,189 - HP15_880 0.61 -0.8 897,278 + HP15_880 0.73 +0.2 897,281 - HP15_880 0.74 +1.0 897,288 + HP15_880 0.75 +0.2 897,296 - HP15_880 0.76 +0.9 897,326 + HP15_880 0.80 +0.3 897,345 + HP15_880 0.83 -0.0 897,345 + HP15_880 0.83 -0.0 897,353 - HP15_880 0.84 +1.3 897,353 - HP15_880 0.84 +0.2 897,353 - HP15_880 0.84 -0.4 897,353 - HP15_880 0.84 -0.3 897,448 - -1.0 897,566 + HP15_881 0.16 +0.3 897,579 - HP15_881 0.19 -0.0 897,579 - HP15_881 0.19 -0.8 897,587 + HP15_881 0.20 -0.0 897,646 - HP15_881 0.31 +0.1 897,747 - HP15_881 0.50 +0.5 897,851 - HP15_881 0.69 -0.3 897,918 - HP15_881 0.81 -0.5 897,955 + HP15_881 0.88 +0.9 897,963 - HP15_881 0.90 +0.7 898,144 + +0.3 898,238 + -0.5 898,246 - +0.1 898,246 - +0.1 898,411 + HP15_882 0.20 -1.3 898,492 - HP15_882 0.25 -0.9 898,642 + HP15_882 0.35 -0.2 898,643 - HP15_882 0.35 -0.9 898,720 + HP15_882 0.40 +0.0 898,809 + HP15_882 0.46 +0.0 898,908 - HP15_882 0.52 +0.1 898,920 - HP15_882 0.53 +0.8 898,968 + HP15_882 0.56 -0.2 898,968 + HP15_882 0.56 -0.4 899,026 + HP15_882 0.60 -1.4 899,062 + HP15_882 0.62 -0.1 899,094 + HP15_882 0.64 -1.5 899,187 - HP15_882 0.70 -0.4 899,207 - HP15_882 0.71 -0.4 899,241 - HP15_882 0.73 -0.4 899,380 - HP15_882 0.82 -1.5 899,380 - HP15_882 0.82 -1.3 899,380 - HP15_882 0.82 +0.9 899,460 + HP15_882 0.87 +0.2 899,571 + +0.8 899,579 - +0.1 899,628 + -1.5 899,630 + +1.6 899,636 - -0.1 899,636 - +0.7 899,689 - +0.9 899,691 + +3.0 899,691 + +0.1 899,691 + +2.5 899,739 - +0.2 899,780 + +3.2 899,812 + -0.7 899,812 + +1.5 899,844 - +0.3 899,870 - -0.0 899,956 - HP15_883 0.14 -1.0 899,972 - HP15_883 0.15 -0.1 899,997 + HP15_883 0.17 -1.4 900,002 + HP15_883 0.17 -0.1 900,002 + HP15_883 0.17 -0.4 900,002 + HP15_883 0.17 -0.1 900,002 + HP15_883 0.17 +0.4 900,010 - HP15_883 0.18 -0.3 900,010 - HP15_883 0.18 +1.9 900,010 - HP15_883 0.18 -0.3 900,224 + HP15_883 0.33 +0.2 900,313 + HP15_883 0.39 +0.6 900,388 - HP15_883 0.44 -0.3 900,388 - HP15_883 0.44 -0.3 900,388 - HP15_883 0.44 -0.4 900,520 + HP15_883 0.53 +0.4 900,660 + HP15_883 0.63 -1.6
Or see this region's nucleotide sequence