Experiment: m.b. syringaldehyde 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00890 and PGA1_c00900 are separated by 69 nucleotides PGA1_c00900 and PGA1_c00910 are separated by 12 nucleotides PGA1_c00910 and PGA1_c00920 are separated by 17 nucleotides PGA1_c00920 and PGA1_c00930 overlap by 4 nucleotides
PGA1_c00890: PGA1_c00890 - peptide deformylase Def, at 87,253 to 87,750
_c00890
PGA1_c00900: PGA1_c00900 - methionyl-tRNA formyltransferase Fmt, at 87,820 to 88,725
_c00900
PGA1_c00910: PGA1_c00910 - hypothetical protein, at 88,738 to 88,974
_c00910
PGA1_c00920: PGA1_c00920 - putative transporter, required for glycine utilization <small>(from data)</small>, at 88,992 to 89,615
_c00920
PGA1_c00930: PGA1_c00930 - ribonuclease H, at 89,612 to 90,079
_c00930
Position (kb) 88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 87.792 kb on + strand at 87.803 kb on + strand at 87.803 kb on + strand at 87.803 kb on + strand at 87.805 kb on + strand at 87.812 kb on + strand at 88.719 kb on + strand at 88.719 kb on - strand at 88.727 kb on + strand at 88.727 kb on - strand at 88.758 kb on - strand at 88.760 kb on + strand at 88.876 kb on + strand, within PGA1_c00910 at 88.884 kb on - strand, within PGA1_c00910 at 89.068 kb on - strand, within PGA1_c00920 at 89.072 kb on + strand, within PGA1_c00920 at 89.078 kb on - strand, within PGA1_c00920 at 89.080 kb on - strand, within PGA1_c00920 at 89.082 kb on + strand, within PGA1_c00920 at 89.082 kb on + strand, within PGA1_c00920 at 89.082 kb on + strand, within PGA1_c00920 at 89.088 kb on - strand, within PGA1_c00920 at 89.116 kb on - strand, within PGA1_c00920 at 89.116 kb on - strand, within PGA1_c00920 at 89.139 kb on - strand, within PGA1_c00920 at 89.186 kb on - strand, within PGA1_c00920 at 89.188 kb on + strand, within PGA1_c00920 at 89.271 kb on + strand, within PGA1_c00920 at 89.271 kb on + strand, within PGA1_c00920 at 89.271 kb on + strand, within PGA1_c00920 at 89.279 kb on - strand, within PGA1_c00920 at 89.302 kb on - strand, within PGA1_c00920 at 89.306 kb on - strand, within PGA1_c00920 at 89.369 kb on - strand, within PGA1_c00920 at 89.445 kb on - strand, within PGA1_c00920 at 89.558 kb on + strand at 89.558 kb on + strand at 89.576 kb on + strand at 89.579 kb on + strand at 89.600 kb on + strand at 89.609 kb on - strand at 89.639 kb on - strand at 89.640 kb on - strand at 89.647 kb on + strand at 89.826 kb on - strand, within PGA1_c00930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM remove 87,792 + -1.3 87,803 + -2.2 87,803 + -0.2 87,803 + -1.2 87,805 + +0.9 87,812 + +0.6 88,719 + -1.6 88,719 - -0.3 88,727 + -2.5 88,727 - -0.1 88,758 - +0.8 88,760 + -1.0 88,876 + PGA1_c00910 0.58 +1.9 88,884 - PGA1_c00910 0.62 -0.7 89,068 - PGA1_c00920 0.12 +0.0 89,072 + PGA1_c00920 0.13 -0.4 89,078 - PGA1_c00920 0.14 -0.9 89,080 - PGA1_c00920 0.14 -0.6 89,082 + PGA1_c00920 0.14 -2.2 89,082 + PGA1_c00920 0.14 -1.2 89,082 + PGA1_c00920 0.14 +0.9 89,088 - PGA1_c00920 0.15 -3.1 89,116 - PGA1_c00920 0.20 +0.9 89,116 - PGA1_c00920 0.20 -0.5 89,139 - PGA1_c00920 0.24 -1.7 89,186 - PGA1_c00920 0.31 -0.4 89,188 + PGA1_c00920 0.31 +0.3 89,271 + PGA1_c00920 0.45 +0.4 89,271 + PGA1_c00920 0.45 -1.2 89,271 + PGA1_c00920 0.45 -0.2 89,279 - PGA1_c00920 0.46 -0.3 89,302 - PGA1_c00920 0.50 -1.5 89,306 - PGA1_c00920 0.50 -0.2 89,369 - PGA1_c00920 0.60 -1.1 89,445 - PGA1_c00920 0.73 -0.2 89,558 + -0.4 89,558 + -0.7 89,576 + +1.5 89,579 + -1.4 89,600 + +0.6 89,609 - -1.3 89,639 - -0.7 89,640 - +1.1 89,647 + -0.6 89,826 - PGA1_c00930 0.46 +0.5
Or see this region's nucleotide sequence