Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_848 and HP15_849 are separated by 125 nucleotides HP15_849 and HP15_850 are separated by 114 nucleotides HP15_850 and HP15_851 are separated by 24 nucleotides HP15_851 and HP15_852 are separated by 25 nucleotides HP15_852 and HP15_853 are separated by 18 nucleotides
HP15_848: HP15_848 - protein containing DUF980, at 866,589 to 867,419
_848
HP15_849: HP15_849 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 867,545 to 868,237
_849
HP15_850: HP15_850 - GGDEF domain protein, at 868,352 to 869,392
_850
HP15_851: HP15_851 - integral membrane protein-like protein, at 869,417 to 869,872
_851
HP15_852: HP15_852 - MaoC-like dehydratase, at 869,898 to 870,368
_852
HP15_853: HP15_853 - RIO1/ZK632.3/MJ0444 family protein, at 870,387 to 871,283
_853
Position (kb) 868
869
870 Strain fitness (log2 ratio) -1
0
1
2
3 at 867.484 kb on + strand at 867.614 kb on + strand at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.639 kb on - strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.722 kb on + strand, within HP15_849 at 867.762 kb on - strand, within HP15_849 at 867.780 kb on + strand, within HP15_849 at 867.882 kb on - strand, within HP15_849 at 868.073 kb on - strand, within HP15_849 at 868.285 kb on + strand at 868.365 kb on - strand at 868.382 kb on + strand at 868.436 kb on - strand at 868.562 kb on + strand, within HP15_850 at 868.570 kb on - strand, within HP15_850 at 868.702 kb on - strand, within HP15_850 at 868.720 kb on - strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.794 kb on - strand, within HP15_850 at 869.077 kb on - strand, within HP15_850 at 869.102 kb on + strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.124 kb on - strand, within HP15_850 at 869.135 kb on - strand, within HP15_850 at 869.191 kb on - strand, within HP15_850 at 869.311 kb on - strand at 869.370 kb on + strand at 869.385 kb on - strand at 869.454 kb on - strand at 869.586 kb on + strand, within HP15_851 at 869.786 kb on - strand, within HP15_851 at 869.837 kb on - strand at 869.867 kb on + strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.984 kb on - strand, within HP15_852 at 870.048 kb on + strand, within HP15_852 at 870.055 kb on - strand, within HP15_852 at 870.100 kb on + strand, within HP15_852 at 870.195 kb on - strand, within HP15_852 at 870.233 kb on + strand, within HP15_852 at 870.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 867,484 + -0.1 867,614 + +0.2 867,631 + HP15_849 0.12 -0.6 867,631 + HP15_849 0.12 -0.1 867,631 + HP15_849 0.12 +3.1 867,631 + HP15_849 0.12 -0.9 867,639 - HP15_849 0.14 -0.5 867,720 + HP15_849 0.25 +0.5 867,720 + HP15_849 0.25 -0.7 867,722 + HP15_849 0.26 -1.0 867,762 - HP15_849 0.31 -0.1 867,780 + HP15_849 0.34 -1.3 867,882 - HP15_849 0.49 -0.1 868,073 - HP15_849 0.76 +0.6 868,285 + -0.7 868,365 - +1.5 868,382 + +0.2 868,436 - +0.4 868,562 + HP15_850 0.20 +0.1 868,570 - HP15_850 0.21 +0.6 868,702 - HP15_850 0.34 +0.3 868,720 - HP15_850 0.35 -0.4 868,784 + HP15_850 0.41 -0.1 868,784 + HP15_850 0.41 +1.3 868,784 + HP15_850 0.41 +0.4 868,792 - HP15_850 0.42 +0.1 868,792 - HP15_850 0.42 +0.1 868,792 - HP15_850 0.42 +0.3 868,792 - HP15_850 0.42 -0.1 868,792 - HP15_850 0.42 +0.2 868,794 - HP15_850 0.42 +1.6 869,077 - HP15_850 0.70 +0.3 869,102 + HP15_850 0.72 +1.5 869,110 - HP15_850 0.73 +1.1 869,110 - HP15_850 0.73 +0.1 869,124 - HP15_850 0.74 +1.0 869,135 - HP15_850 0.75 +1.2 869,191 - HP15_850 0.81 +0.1 869,311 - -0.1 869,370 + -0.3 869,385 - +1.6 869,454 - +0.3 869,586 + HP15_851 0.37 +0.6 869,786 - HP15_851 0.81 -1.1 869,837 - +0.1 869,867 + +0.0 869,875 - -0.8 869,875 - -0.1 869,875 - +0.5 869,984 - HP15_852 0.18 +1.9 870,048 + HP15_852 0.32 +2.7 870,055 - HP15_852 0.33 -1.3 870,100 + HP15_852 0.43 +0.2 870,195 - HP15_852 0.63 -0.1 870,233 + HP15_852 0.71 +0.0 870,377 + +0.9
Or see this region's nucleotide sequence