Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_79 and HP15_80 overlap by 8 nucleotides HP15_80 and HP15_81 are separated by 177 nucleotides HP15_81 and HP15_82 are separated by 50 nucleotides HP15_82 and HP15_83 are separated by 510 nucleotides
HP15_79: HP15_79 - phage integrase family protein, at 88,466 to 89,674
_79
HP15_80: HP15_80 - conserved hypothetical protein, at 89,667 to 89,903
_80
HP15_81: HP15_81 - transcriptional regulator, Cro/CI family protein-like protein, at 90,081 to 90,260
_81
HP15_82: HP15_82 - hypothetical protein, at 90,311 to 90,448
_82
HP15_83: HP15_83 - electron transport protein SCO1/SenC, at 90,959 to 91,531
_83
Position (kb)
90
91 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 89.439 kb on + strand, within HP15_79 at 89.511 kb on - strand, within HP15_79 at 89.582 kb on + strand at 89.582 kb on + strand at 89.585 kb on - strand at 89.587 kb on - strand at 89.591 kb on + strand at 89.604 kb on - strand at 89.614 kb on - strand at 89.664 kb on + strand at 89.786 kb on + strand, within HP15_80 at 89.786 kb on + strand, within HP15_80 at 89.794 kb on - strand, within HP15_80 at 89.794 kb on - strand, within HP15_80 at 89.796 kb on + strand, within HP15_80 at 89.816 kb on - strand, within HP15_80 at 89.850 kb on - strand, within HP15_80 at 89.876 kb on + strand, within HP15_80 at 89.882 kb on - strand at 90.270 kb on - strand at 90.386 kb on - strand, within HP15_82 at 90.407 kb on - strand, within HP15_82 at 90.410 kb on + strand, within HP15_82 at 90.428 kb on + strand, within HP15_82 at 90.447 kb on + strand at 90.447 kb on + strand at 90.453 kb on - strand at 90.453 kb on - strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.518 kb on - strand at 90.562 kb on - strand at 90.594 kb on - strand at 90.652 kb on - strand at 90.659 kb on - strand at 90.802 kb on + strand at 90.802 kb on + strand at 90.858 kb on - strand at 90.897 kb on - strand at 90.941 kb on + strand at 90.989 kb on + strand at 91.044 kb on - strand, within HP15_83 at 91.044 kb on - strand, within HP15_83 at 91.079 kb on + strand, within HP15_83 at 91.144 kb on + strand, within HP15_83 at 91.144 kb on + strand, within HP15_83 at 91.152 kb on - strand, within HP15_83 at 91.159 kb on + strand, within HP15_83 at 91.160 kb on - strand, within HP15_83 at 91.167 kb on - strand, within HP15_83 at 91.233 kb on - strand, within HP15_83 at 91.238 kb on + strand, within HP15_83 at 91.272 kb on - strand, within HP15_83
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 89,439 + HP15_79 0.80 +1.5 89,511 - HP15_79 0.86 +0.1 89,582 + -0.5 89,582 + -0.1 89,585 - -0.1 89,587 - +1.4 89,591 + -0.5 89,604 - -0.1 89,614 - +0.3 89,664 + +2.2 89,786 + HP15_80 0.50 +0.1 89,786 + HP15_80 0.50 +1.2 89,794 - HP15_80 0.54 -0.7 89,794 - HP15_80 0.54 -1.5 89,796 + HP15_80 0.54 -0.2 89,816 - HP15_80 0.63 +0.8 89,850 - HP15_80 0.77 -0.8 89,876 + HP15_80 0.88 +0.9 89,882 - -0.9 90,270 - -0.0 90,386 - HP15_82 0.54 -0.7 90,407 - HP15_82 0.70 +0.1 90,410 + HP15_82 0.72 -0.3 90,428 + HP15_82 0.85 -0.8 90,447 + -0.6 90,447 + +0.2 90,453 - +0.0 90,453 - -1.8 90,483 + +0.1 90,483 + -1.0 90,483 + +0.0 90,483 + -0.1 90,483 + +0.2 90,483 + +0.1 90,483 + +0.2 90,483 + +1.4 90,491 - -0.3 90,491 - -1.6 90,491 - -2.0 90,491 - -1.5 90,491 - +0.2 90,491 - +0.1 90,518 - -0.1 90,562 - -0.9 90,594 - -0.9 90,652 - -0.4 90,659 - +1.1 90,802 + +0.4 90,802 + +0.7 90,858 - +1.2 90,897 - -0.4 90,941 + -0.3 90,989 + -1.2 91,044 - HP15_83 0.15 +0.5 91,044 - HP15_83 0.15 +0.0 91,079 + HP15_83 0.21 +0.6 91,144 + HP15_83 0.32 -0.0 91,144 + HP15_83 0.32 +0.3 91,152 - HP15_83 0.34 +0.0 91,159 + HP15_83 0.35 -0.3 91,160 - HP15_83 0.35 -0.1 91,167 - HP15_83 0.36 +0.0 91,233 - HP15_83 0.48 +0.9 91,238 + HP15_83 0.49 -0.2 91,272 - HP15_83 0.55 +2.2
Or see this region's nucleotide sequence