Strain Fitness in Marinobacter adhaerens HP15 around HP15_82

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_79 and HP15_80 overlap by 8 nucleotidesHP15_80 and HP15_81 are separated by 177 nucleotidesHP15_81 and HP15_82 are separated by 50 nucleotidesHP15_82 and HP15_83 are separated by 510 nucleotides HP15_79: HP15_79 - phage integrase family protein, at 88,466 to 89,674 _79 HP15_80: HP15_80 - conserved hypothetical protein, at 89,667 to 89,903 _80 HP15_81: HP15_81 - transcriptional regulator, Cro/CI family protein-like protein, at 90,081 to 90,260 _81 HP15_82: HP15_82 - hypothetical protein, at 90,311 to 90,448 _82 HP15_83: HP15_83 - electron transport protein SCO1/SenC, at 90,959 to 91,531 _83 Position (kb) 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 89.439 kb on + strand, within HP15_79at 89.511 kb on - strand, within HP15_79at 89.582 kb on + strandat 89.582 kb on + strandat 89.585 kb on - strandat 89.587 kb on - strandat 89.591 kb on + strandat 89.604 kb on - strandat 89.614 kb on - strandat 89.664 kb on + strandat 89.786 kb on + strand, within HP15_80at 89.786 kb on + strand, within HP15_80at 89.794 kb on - strand, within HP15_80at 89.794 kb on - strand, within HP15_80at 89.796 kb on + strand, within HP15_80at 89.816 kb on - strand, within HP15_80at 89.850 kb on - strand, within HP15_80at 89.876 kb on + strand, within HP15_80at 89.882 kb on - strandat 90.270 kb on - strandat 90.386 kb on - strand, within HP15_82at 90.407 kb on - strand, within HP15_82at 90.410 kb on + strand, within HP15_82at 90.428 kb on + strand, within HP15_82at 90.447 kb on + strandat 90.447 kb on + strandat 90.453 kb on - strandat 90.453 kb on - strandat 90.483 kb on + strandat 90.483 kb on + strandat 90.483 kb on + strandat 90.483 kb on + strandat 90.483 kb on + strandat 90.483 kb on + strandat 90.483 kb on + strandat 90.483 kb on + strandat 90.491 kb on - strandat 90.491 kb on - strandat 90.491 kb on - strandat 90.491 kb on - strandat 90.491 kb on - strandat 90.491 kb on - strandat 90.518 kb on - strandat 90.562 kb on - strandat 90.594 kb on - strandat 90.652 kb on - strandat 90.659 kb on - strandat 90.802 kb on + strandat 90.802 kb on + strandat 90.858 kb on - strandat 90.897 kb on - strandat 90.941 kb on + strandat 90.989 kb on + strandat 91.044 kb on - strand, within HP15_83at 91.044 kb on - strand, within HP15_83at 91.079 kb on + strand, within HP15_83at 91.144 kb on + strand, within HP15_83at 91.144 kb on + strand, within HP15_83at 91.152 kb on - strand, within HP15_83at 91.159 kb on + strand, within HP15_83at 91.160 kb on - strand, within HP15_83at 91.167 kb on - strand, within HP15_83at 91.233 kb on - strand, within HP15_83at 91.238 kb on + strand, within HP15_83at 91.272 kb on - strand, within HP15_83

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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89,439 + HP15_79 0.80 +1.5
89,511 - HP15_79 0.86 +0.1
89,582 + -0.5
89,582 + -0.1
89,585 - -0.1
89,587 - +1.4
89,591 + -0.5
89,604 - -0.1
89,614 - +0.3
89,664 + +2.2
89,786 + HP15_80 0.50 +0.1
89,786 + HP15_80 0.50 +1.2
89,794 - HP15_80 0.54 -0.7
89,794 - HP15_80 0.54 -1.5
89,796 + HP15_80 0.54 -0.2
89,816 - HP15_80 0.63 +0.8
89,850 - HP15_80 0.77 -0.8
89,876 + HP15_80 0.88 +0.9
89,882 - -0.9
90,270 - -0.0
90,386 - HP15_82 0.54 -0.7
90,407 - HP15_82 0.70 +0.1
90,410 + HP15_82 0.72 -0.3
90,428 + HP15_82 0.85 -0.8
90,447 + -0.6
90,447 + +0.2
90,453 - +0.0
90,453 - -1.8
90,483 + +0.1
90,483 + -1.0
90,483 + +0.0
90,483 + -0.1
90,483 + +0.2
90,483 + +0.1
90,483 + +0.2
90,483 + +1.4
90,491 - -0.3
90,491 - -1.6
90,491 - -2.0
90,491 - -1.5
90,491 - +0.2
90,491 - +0.1
90,518 - -0.1
90,562 - -0.9
90,594 - -0.9
90,652 - -0.4
90,659 - +1.1
90,802 + +0.4
90,802 + +0.7
90,858 - +1.2
90,897 - -0.4
90,941 + -0.3
90,989 + -1.2
91,044 - HP15_83 0.15 +0.5
91,044 - HP15_83 0.15 +0.0
91,079 + HP15_83 0.21 +0.6
91,144 + HP15_83 0.32 -0.0
91,144 + HP15_83 0.32 +0.3
91,152 - HP15_83 0.34 +0.0
91,159 + HP15_83 0.35 -0.3
91,160 - HP15_83 0.35 -0.1
91,167 - HP15_83 0.36 +0.0
91,233 - HP15_83 0.48 +0.9
91,238 + HP15_83 0.49 -0.2
91,272 - HP15_83 0.55 +2.2

Or see this region's nucleotide sequence