Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08230

Experiment: m.b. syringaldehyde 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08200 and PGA1_c08210 are separated by 154 nucleotidesPGA1_c08210 and PGA1_c08220 are separated by 2 nucleotidesPGA1_c08220 and PGA1_c08230 are separated by 39 nucleotidesPGA1_c08230 and PGA1_c08240 are separated by 296 nucleotides PGA1_c08200: PGA1_c08200 - cob(I)yrinic acid a,c-diamide adenosyltransferase CobO, at 850,002 to 850,637 _c08200 PGA1_c08210: PGA1_c08210 - Predicted enzyme related to lactoylglutathione lyase, at 850,792 to 851,199 _c08210 PGA1_c08220: PGA1_c08220 - Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily., at 851,202 to 851,579 _c08220 PGA1_c08230: PGA1_c08230 - Predicted transcriptional regulators, at 851,619 to 852,164 _c08230 PGA1_c08240: PGA1_c08240 - aerobic glycerol-3-phosphate dehydrogenase GlpD, at 852,461 to 854,050 _c08240 Position (kb) 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 850.631 kb on + strandat 850.631 kb on + strandat 850.631 kb on + strandat 850.639 kb on - strandat 850.639 kb on - strandat 850.639 kb on - strandat 850.639 kb on - strandat 850.718 kb on + strandat 850.718 kb on + strandat 850.718 kb on + strandat 850.718 kb on + strandat 850.731 kb on + strandat 850.815 kb on + strandat 850.818 kb on - strandat 850.827 kb on - strandat 850.847 kb on - strand, within PGA1_c08210at 850.857 kb on - strand, within PGA1_c08210at 850.857 kb on - strand, within PGA1_c08210at 850.904 kb on + strand, within PGA1_c08210at 850.930 kb on - strand, within PGA1_c08210at 850.960 kb on + strand, within PGA1_c08210at 850.969 kb on - strand, within PGA1_c08210at 851.018 kb on - strand, within PGA1_c08210at 851.031 kb on + strand, within PGA1_c08210at 851.034 kb on - strand, within PGA1_c08210at 851.036 kb on + strand, within PGA1_c08210at 851.036 kb on + strand, within PGA1_c08210at 851.036 kb on + strand, within PGA1_c08210at 851.036 kb on + strand, within PGA1_c08210at 851.036 kb on + strand, within PGA1_c08210at 851.039 kb on - strand, within PGA1_c08210at 851.039 kb on - strand, within PGA1_c08210at 851.039 kb on - strand, within PGA1_c08210at 851.039 kb on - strand, within PGA1_c08210at 851.057 kb on + strand, within PGA1_c08210at 851.065 kb on - strand, within PGA1_c08210at 851.085 kb on - strand, within PGA1_c08210at 851.183 kb on + strandat 851.183 kb on + strandat 851.183 kb on + strandat 851.191 kb on - strandat 851.191 kb on - strandat 851.191 kb on - strandat 851.194 kb on + strandat 851.214 kb on + strandat 851.269 kb on + strand, within PGA1_c08220at 851.274 kb on + strand, within PGA1_c08220at 851.274 kb on + strand, within PGA1_c08220at 851.282 kb on - strand, within PGA1_c08220at 851.289 kb on - strand, within PGA1_c08220at 851.324 kb on + strand, within PGA1_c08220at 851.332 kb on - strand, within PGA1_c08220at 851.371 kb on + strand, within PGA1_c08220at 851.400 kb on - strand, within PGA1_c08220at 851.444 kb on + strand, within PGA1_c08220at 851.505 kb on - strand, within PGA1_c08220at 851.505 kb on - strand, within PGA1_c08220at 851.508 kb on + strand, within PGA1_c08220at 851.515 kb on - strand, within PGA1_c08220at 851.645 kb on + strandat 851.647 kb on + strandat 851.647 kb on + strandat 851.678 kb on - strand, within PGA1_c08230at 851.699 kb on - strand, within PGA1_c08230at 851.743 kb on - strand, within PGA1_c08230at 851.766 kb on - strand, within PGA1_c08230at 851.906 kb on + strand, within PGA1_c08230at 851.935 kb on - strand, within PGA1_c08230at 852.003 kb on - strand, within PGA1_c08230at 852.043 kb on + strand, within PGA1_c08230at 852.061 kb on + strand, within PGA1_c08230at 852.110 kb on - strandat 852.112 kb on + strandat 852.112 kb on + strandat 852.112 kb on + strandat 852.113 kb on - strandat 852.113 kb on - strandat 852.120 kb on - strandat 852.120 kb on - strandat 852.120 kb on - strandat 852.120 kb on - strandat 852.135 kb on - strandat 852.160 kb on + strandat 852.190 kb on + strandat 852.251 kb on - strandat 852.368 kb on + strandat 852.385 kb on + strandat 852.443 kb on - strandat 852.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM
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850,631 + -0.8
850,631 + -0.6
850,631 + -1.6
850,639 - +1.4
850,639 - -0.0
850,639 - -0.6
850,639 - -0.4
850,718 + +1.8
850,718 + -0.0
850,718 + +3.1
850,718 + -1.0
850,731 + -0.2
850,815 + -0.6
850,818 - -0.0
850,827 - +1.0
850,847 - PGA1_c08210 0.13 -0.6
850,857 - PGA1_c08210 0.16 +2.0
850,857 - PGA1_c08210 0.16 -0.6
850,904 + PGA1_c08210 0.27 +2.5
850,930 - PGA1_c08210 0.34 +0.5
850,960 + PGA1_c08210 0.41 -0.4
850,969 - PGA1_c08210 0.43 -0.3
851,018 - PGA1_c08210 0.55 -1.0
851,031 + PGA1_c08210 0.59 +1.0
851,034 - PGA1_c08210 0.59 -0.0
851,036 + PGA1_c08210 0.60 +0.1
851,036 + PGA1_c08210 0.60 -0.6
851,036 + PGA1_c08210 0.60 -2.0
851,036 + PGA1_c08210 0.60 +1.2
851,036 + PGA1_c08210 0.60 +0.1
851,039 - PGA1_c08210 0.61 +0.2
851,039 - PGA1_c08210 0.61 +1.0
851,039 - PGA1_c08210 0.61 +2.3
851,039 - PGA1_c08210 0.61 -1.2
851,057 + PGA1_c08210 0.65 -1.0
851,065 - PGA1_c08210 0.67 -1.6
851,085 - PGA1_c08210 0.72 +0.5
851,183 + -1.4
851,183 + +1.0
851,183 + -0.3
851,191 - -0.0
851,191 - -0.4
851,191 - +0.5
851,194 + -2.3
851,214 + -1.0
851,269 + PGA1_c08220 0.18 +1.2
851,274 + PGA1_c08220 0.19 -1.4
851,274 + PGA1_c08220 0.19 +1.0
851,282 - PGA1_c08220 0.21 -1.4
851,289 - PGA1_c08220 0.23 -0.4
851,324 + PGA1_c08220 0.32 -2.4
851,332 - PGA1_c08220 0.34 +0.2
851,371 + PGA1_c08220 0.45 -0.3
851,400 - PGA1_c08220 0.52 +0.6
851,444 + PGA1_c08220 0.64 +0.1
851,505 - PGA1_c08220 0.80 -0.0
851,505 - PGA1_c08220 0.80 +0.8
851,508 + PGA1_c08220 0.81 -0.7
851,515 - PGA1_c08220 0.83 -0.0
851,645 + -1.2
851,647 + +0.6
851,647 + -3.4
851,678 - PGA1_c08230 0.11 -2.2
851,699 - PGA1_c08230 0.15 -1.7
851,743 - PGA1_c08230 0.23 -0.4
851,766 - PGA1_c08230 0.27 +0.8
851,906 + PGA1_c08230 0.53 -1.6
851,935 - PGA1_c08230 0.58 +1.0
852,003 - PGA1_c08230 0.70 -2.4
852,043 + PGA1_c08230 0.78 +0.4
852,061 + PGA1_c08230 0.81 -1.0
852,110 - -0.6
852,112 + -0.6
852,112 + +0.3
852,112 + +2.0
852,113 - +1.0
852,113 - -2.0
852,120 - +1.0
852,120 - +1.7
852,120 - +0.2
852,120 - +2.3
852,135 - +0.3
852,160 + -0.0
852,190 + +1.0
852,251 - +0.5
852,368 + -0.5
852,385 + +0.3
852,443 - -0.5
852,475 - -0.6

Or see this region's nucleotide sequence