Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08060

Experiment: m.b. syringaldehyde 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08040 and PGA1_c08050 are separated by 75 nucleotidesPGA1_c08050 and PGA1_c08060 are separated by 69 nucleotidesPGA1_c08060 and PGA1_c08070 are separated by 432 nucleotides PGA1_c08040: PGA1_c08040 - tRNA-Ser, at 834,204 to 834,293 _c08040 PGA1_c08050: PGA1_c08050 - putative precorrin-6A synthase (deacetylating), cobF, at 834,369 to 835,136 _c08050 PGA1_c08060: PGA1_c08060 - hypothetical protein, at 835,206 to 835,883 _c08060 PGA1_c08070: PGA1_c08070 - uroporphyrin-III C-methyltransferase CobA, at 836,316 to 837,080 _c08070 Position (kb) 835 836Strain fitness (log2 ratio) -2 -1 0 1at 834.317 kb on - strandat 835.228 kb on + strandat 835.270 kb on + strandat 835.275 kb on + strand, within PGA1_c08060at 835.275 kb on + strand, within PGA1_c08060at 835.275 kb on + strand, within PGA1_c08060at 835.278 kb on - strand, within PGA1_c08060at 835.283 kb on - strand, within PGA1_c08060at 835.327 kb on - strand, within PGA1_c08060at 835.429 kb on - strand, within PGA1_c08060at 835.489 kb on - strand, within PGA1_c08060at 835.536 kb on + strand, within PGA1_c08060at 835.593 kb on - strand, within PGA1_c08060at 835.732 kb on + strand, within PGA1_c08060at 835.740 kb on - strand, within PGA1_c08060at 835.740 kb on - strand, within PGA1_c08060at 835.740 kb on - strand, within PGA1_c08060at 835.759 kb on - strand, within PGA1_c08060at 835.759 kb on - strand, within PGA1_c08060at 835.784 kb on + strand, within PGA1_c08060at 835.809 kb on + strand, within PGA1_c08060at 835.831 kb on + strandat 835.839 kb on - strandat 835.846 kb on + strandat 835.905 kb on + strandat 836.077 kb on + strandat 836.109 kb on + strandat 836.131 kb on - strandat 836.177 kb on + strandat 836.276 kb on + strandat 836.276 kb on + strandat 836.276 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM
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834,317 - -1.2
835,228 + -0.0
835,270 + -0.0
835,275 + PGA1_c08060 0.10 -1.4
835,275 + PGA1_c08060 0.10 -0.7
835,275 + PGA1_c08060 0.10 -2.2
835,278 - PGA1_c08060 0.11 -1.6
835,283 - PGA1_c08060 0.11 -0.8
835,327 - PGA1_c08060 0.18 +1.0
835,429 - PGA1_c08060 0.33 +1.2
835,489 - PGA1_c08060 0.42 -0.6
835,536 + PGA1_c08060 0.49 -2.2
835,593 - PGA1_c08060 0.57 -0.0
835,732 + PGA1_c08060 0.78 +1.0
835,740 - PGA1_c08060 0.79 -1.0
835,740 - PGA1_c08060 0.79 -1.4
835,740 - PGA1_c08060 0.79 -1.8
835,759 - PGA1_c08060 0.82 -0.3
835,759 - PGA1_c08060 0.82 -2.2
835,784 + PGA1_c08060 0.85 -2.0
835,809 + PGA1_c08060 0.89 +0.5
835,831 + +1.0
835,839 - -1.7
835,846 + +0.6
835,905 + -1.5
836,077 + -1.6
836,109 + -0.1
836,131 - +0.2
836,177 + -1.0
836,276 + +0.2
836,276 + +0.4
836,276 + -1.6

Or see this region's nucleotide sequence