Strain Fitness in Marinobacter adhaerens HP15 around HP15_762

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_760 and HP15_761 are separated by 37 nucleotidesHP15_761 and HP15_762 are separated by 114 nucleotidesHP15_762 and HP15_763 are separated by 59 nucleotides HP15_760: HP15_760 - tRNA (guanine-N1)-methyltransferase, at 769,858 to 770,604 _760 HP15_761: HP15_761 - ribosomal protein L19, at 770,642 to 770,998 _761 HP15_762: HP15_762 - site-specific tyrosine recombinase XerD, at 771,113 to 772,015 _762 HP15_763: HP15_763 - protein-disulfide isomerase, at 772,075 to 772,875 _763 Position (kb) 771 772 773Strain fitness (log2 ratio) -1 0 1 2at 771.106 kb on - strandat 771.628 kb on - strand, within HP15_762at 771.748 kb on + strand, within HP15_762at 772.273 kb on - strand, within HP15_763at 772.352 kb on + strand, within HP15_763at 772.396 kb on - strand, within HP15_763at 772.414 kb on - strand, within HP15_763at 772.706 kb on - strand, within HP15_763at 772.763 kb on - strand, within HP15_763at 772.840 kb on + strandat 772.842 kb on - strandat 772.859 kb on + strandat 772.939 kb on - strandat 772.941 kb on + strandat 772.951 kb on + strandat 772.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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771,106 - -0.3
771,628 - HP15_762 0.57 -1.7
771,748 + HP15_762 0.70 +0.1
772,273 - HP15_763 0.25 -0.1
772,352 + HP15_763 0.35 +0.6
772,396 - HP15_763 0.40 +1.9
772,414 - HP15_763 0.42 +1.1
772,706 - HP15_763 0.79 +0.1
772,763 - HP15_763 0.86 +0.5
772,840 + +0.6
772,842 - +1.6
772,859 + -0.1
772,939 - +0.2
772,941 + -0.4
772,951 + -0.8
772,959 - +1.7

Or see this region's nucleotide sequence