Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_737 and HP15_738 overlap by 4 nucleotides HP15_738 and HP15_739 are separated by 178 nucleotides
HP15_737: HP15_737 - DNA polymerase IV, at 745,395 to 746,459
_737
HP15_738: HP15_738 - phosphoesterase, PA-phosphatase, at 746,456 to 746,791
_738
HP15_739: HP15_739 - glycosyl transferase, group 1 family protein, at 746,970 to 748,190
_739
Position (kb) 746
747 Strain fitness (log2 ratio) -1
0
1 at 745.476 kb on - strand at 745.501 kb on - strand at 745.612 kb on - strand, within HP15_737 at 745.639 kb on - strand, within HP15_737 at 745.649 kb on - strand, within HP15_737 at 745.650 kb on - strand, within HP15_737 at 745.731 kb on - strand, within HP15_737 at 745.923 kb on + strand, within HP15_737 at 745.940 kb on + strand, within HP15_737 at 745.986 kb on + strand, within HP15_737 at 745.994 kb on - strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.088 kb on - strand, within HP15_737 at 746.141 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.293 kb on + strand, within HP15_737 at 746.294 kb on - strand, within HP15_737 at 746.404 kb on - strand at 746.461 kb on + strand at 746.471 kb on + strand at 746.497 kb on - strand, within HP15_738 at 746.504 kb on - strand, within HP15_738 at 746.717 kb on + strand, within HP15_738 at 746.774 kb on - strand at 746.795 kb on - strand at 746.797 kb on + strand at 746.907 kb on + strand at 746.912 kb on + strand at 746.976 kb on - strand at 747.097 kb on - strand, within HP15_739 at 747.101 kb on + strand, within HP15_739 at 747.168 kb on - strand, within HP15_739 at 747.170 kb on + strand, within HP15_739 at 747.182 kb on + strand, within HP15_739 at 747.204 kb on + strand, within HP15_739 at 747.238 kb on - strand, within HP15_739 at 747.558 kb on - strand, within HP15_739 at 747.595 kb on - strand, within HP15_739 at 747.611 kb on - strand, within HP15_739
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 745,476 - -0.6 745,501 - +1.0 745,612 - HP15_737 0.20 -0.4 745,639 - HP15_737 0.23 +0.6 745,649 - HP15_737 0.24 +0.1 745,650 - HP15_737 0.24 -0.2 745,731 - HP15_737 0.32 -0.1 745,923 + HP15_737 0.50 -0.7 745,940 + HP15_737 0.51 +0.6 745,986 + HP15_737 0.55 -0.5 745,994 - HP15_737 0.56 -1.3 746,051 + HP15_737 0.62 +0.2 746,051 + HP15_737 0.62 -0.8 746,088 - HP15_737 0.65 +0.6 746,141 - HP15_737 0.70 -0.6 746,189 - HP15_737 0.75 -0.1 746,189 - HP15_737 0.75 -0.4 746,293 + HP15_737 0.84 +0.3 746,294 - HP15_737 0.84 +0.9 746,404 - -0.5 746,461 + +1.1 746,471 + -0.4 746,497 - HP15_738 0.12 +0.5 746,504 - HP15_738 0.14 -0.4 746,717 + HP15_738 0.78 -0.7 746,774 - +0.0 746,795 - -0.1 746,797 + +1.4 746,907 + +1.3 746,912 + +0.1 746,976 - +0.5 747,097 - HP15_739 0.10 -0.1 747,101 + HP15_739 0.11 -0.2 747,168 - HP15_739 0.16 +0.5 747,170 + HP15_739 0.16 +0.2 747,182 + HP15_739 0.17 +0.9 747,204 + HP15_739 0.19 +0.2 747,238 - HP15_739 0.22 +0.1 747,558 - HP15_739 0.48 -0.5 747,595 - HP15_739 0.51 -0.0 747,611 - HP15_739 0.52 +0.2
Or see this region's nucleotide sequence