Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_727 and HP15_728 are separated by 76 nucleotides HP15_728 and HP15_729 are separated by 54 nucleotides HP15_729 and HP15_730 are separated by 82 nucleotides
HP15_727: HP15_727 - methyl-accepting chemotaxis sensory transducer, at 737,034 to 738,728
_727
HP15_728: HP15_728 - PhoH family protein, at 738,805 to 740,160
_728
HP15_729: HP15_729 - signal transduction protein with CBS domains, at 740,215 to 740,706
_729
HP15_730: HP15_730 - protein containing StAR-related lipid-transfer (START) domain, at 740,789 to 741,523
_730
Position (kb) 738
739
740
741 Strain fitness (log2 ratio) -1
0
1
2 at 737.837 kb on - strand, within HP15_727 at 737.888 kb on + strand, within HP15_727 at 737.896 kb on - strand, within HP15_727 at 738.081 kb on + strand, within HP15_727 at 738.108 kb on + strand, within HP15_727 at 738.123 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.262 kb on - strand, within HP15_727 at 738.314 kb on + strand at 738.401 kb on + strand, within HP15_727 at 738.475 kb on + strand, within HP15_727 at 738.485 kb on + strand, within HP15_727 at 738.485 kb on + strand, within HP15_727 at 738.544 kb on - strand, within HP15_727 at 738.572 kb on + strand at 738.597 kb on - strand at 738.729 kb on - strand at 738.853 kb on + strand at 738.875 kb on + strand at 738.907 kb on + strand at 738.915 kb on - strand at 738.959 kb on - strand, within HP15_728 at 738.975 kb on + strand, within HP15_728 at 739.007 kb on + strand, within HP15_728 at 739.128 kb on + strand, within HP15_728 at 739.223 kb on + strand, within HP15_728 at 739.243 kb on + strand, within HP15_728 at 739.358 kb on - strand, within HP15_728 at 739.361 kb on + strand, within HP15_728 at 739.482 kb on - strand, within HP15_728 at 739.676 kb on + strand, within HP15_728 at 739.818 kb on - strand, within HP15_728 at 739.902 kb on - strand, within HP15_728 at 739.920 kb on - strand, within HP15_728 at 739.973 kb on - strand, within HP15_728 at 740.170 kb on + strand at 740.188 kb on - strand at 740.188 kb on - strand at 740.228 kb on + strand at 740.484 kb on + strand, within HP15_729 at 740.500 kb on - strand, within HP15_729 at 740.517 kb on + strand, within HP15_729 at 740.721 kb on - strand at 740.769 kb on + strand at 740.769 kb on + strand at 740.769 kb on + strand at 740.775 kb on - strand at 740.887 kb on - strand, within HP15_730 at 740.922 kb on + strand, within HP15_730 at 740.951 kb on + strand, within HP15_730 at 740.977 kb on - strand, within HP15_730 at 741.008 kb on - strand, within HP15_730 at 741.090 kb on - strand, within HP15_730 at 741.097 kb on + strand, within HP15_730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 737,837 - HP15_727 0.47 -0.4 737,888 + HP15_727 0.50 -0.2 737,896 - HP15_727 0.51 +0.1 738,081 + HP15_727 0.62 -0.3 738,108 + HP15_727 0.63 +0.5 738,123 - HP15_727 0.64 -0.8 738,199 - HP15_727 0.69 +0.4 738,199 - HP15_727 0.69 -0.7 738,199 - HP15_727 0.69 -0.1 738,262 - HP15_727 0.72 -0.2 738,314 + -1.7 738,401 + HP15_727 0.81 -0.0 738,475 + HP15_727 0.85 +1.2 738,485 + HP15_727 0.86 +0.1 738,485 + HP15_727 0.86 -0.3 738,544 - HP15_727 0.89 +0.1 738,572 + +1.8 738,597 - +0.4 738,729 - -0.1 738,853 + -1.7 738,875 + -0.1 738,907 + +0.2 738,915 - +1.1 738,959 - HP15_728 0.11 -0.8 738,975 + HP15_728 0.13 -1.7 739,007 + HP15_728 0.15 -0.4 739,128 + HP15_728 0.24 -0.1 739,223 + HP15_728 0.31 +1.3 739,243 + HP15_728 0.32 +0.6 739,358 - HP15_728 0.41 -0.7 739,361 + HP15_728 0.41 -0.4 739,482 - HP15_728 0.50 -0.8 739,676 + HP15_728 0.64 +0.3 739,818 - HP15_728 0.75 -0.5 739,902 - HP15_728 0.81 +0.3 739,920 - HP15_728 0.82 +0.9 739,973 - HP15_728 0.86 -0.1 740,170 + -0.2 740,188 - -0.7 740,188 - +0.3 740,228 + +1.9 740,484 + HP15_729 0.55 -0.1 740,500 - HP15_729 0.58 +0.2 740,517 + HP15_729 0.61 +0.0 740,721 - +0.7 740,769 + +0.5 740,769 + +0.2 740,769 + +0.9 740,775 - -0.4 740,887 - HP15_730 0.13 -0.6 740,922 + HP15_730 0.18 +0.5 740,951 + HP15_730 0.22 +0.6 740,977 - HP15_730 0.26 +2.7 741,008 - HP15_730 0.30 -0.1 741,090 - HP15_730 0.41 +0.9 741,097 + HP15_730 0.42 -0.1
Or see this region's nucleotide sequence