Experiment: m.b. syringaldehyde 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07480 and PGA1_c07490 overlap by 1 nucleotides PGA1_c07490 and PGA1_c07500 are separated by 98 nucleotides PGA1_c07500 and PGA1_c07510 are separated by 41 nucleotides
PGA1_c07480: PGA1_c07480 - Lysophospholipase, at 772,837 to 773,799
_c07480
PGA1_c07490: PGA1_c07490 - Putative sterol carrier protein, at 773,799 to 774,086
_c07490
PGA1_c07500: PGA1_c07500 - hypothetical protein, at 774,185 to 774,754
_c07500
PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813
_c07510
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 772.815 kb on - strand at 772.817 kb on + strand at 772.817 kb on + strand at 772.819 kb on - strand at 772.909 kb on - strand at 772.937 kb on + strand, within PGA1_c07480 at 772.972 kb on + strand, within PGA1_c07480 at 773.019 kb on + strand, within PGA1_c07480 at 773.024 kb on + strand, within PGA1_c07480 at 773.032 kb on - strand, within PGA1_c07480 at 773.053 kb on + strand, within PGA1_c07480 at 773.078 kb on + strand, within PGA1_c07480 at 773.090 kb on - strand, within PGA1_c07480 at 773.135 kb on + strand, within PGA1_c07480 at 773.135 kb on + strand, within PGA1_c07480 at 773.143 kb on - strand, within PGA1_c07480 at 773.143 kb on - strand, within PGA1_c07480 at 773.161 kb on - strand, within PGA1_c07480 at 773.200 kb on + strand, within PGA1_c07480 at 773.200 kb on + strand, within PGA1_c07480 at 773.298 kb on + strand, within PGA1_c07480 at 773.298 kb on + strand, within PGA1_c07480 at 773.301 kb on - strand, within PGA1_c07480 at 773.301 kb on - strand, within PGA1_c07480 at 773.326 kb on - strand, within PGA1_c07480 at 773.352 kb on - strand, within PGA1_c07480 at 773.352 kb on - strand, within PGA1_c07480 at 773.362 kb on - strand, within PGA1_c07480 at 773.379 kb on + strand, within PGA1_c07480 at 773.382 kb on + strand, within PGA1_c07480 at 773.409 kb on + strand, within PGA1_c07480 at 773.562 kb on + strand, within PGA1_c07480 at 773.582 kb on + strand, within PGA1_c07480 at 773.586 kb on + strand, within PGA1_c07480 at 773.586 kb on + strand, within PGA1_c07480 at 773.587 kb on + strand, within PGA1_c07480 at 773.587 kb on + strand, within PGA1_c07480 at 773.587 kb on + strand, within PGA1_c07480 at 773.697 kb on + strand, within PGA1_c07480 at 773.731 kb on + strand at 773.761 kb on + strand at 773.773 kb on + strand at 773.797 kb on + strand at 773.805 kb on - strand at 773.817 kb on - strand at 773.913 kb on + strand, within PGA1_c07490 at 774.002 kb on - strand, within PGA1_c07490 at 774.069 kb on + strand at 774.086 kb on + strand at 774.107 kb on - strand at 774.166 kb on + strand at 774.172 kb on + strand at 774.172 kb on + strand at 774.174 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.213 kb on - strand at 774.229 kb on + strand at 774.229 kb on + strand at 774.237 kb on - strand at 774.247 kb on - strand, within PGA1_c07500 at 774.247 kb on - strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.311 kb on + strand, within PGA1_c07500 at 774.318 kb on - strand, within PGA1_c07500 at 774.318 kb on - strand, within PGA1_c07500 at 774.338 kb on + strand, within PGA1_c07500 at 774.338 kb on + strand, within PGA1_c07500 at 774.341 kb on - strand, within PGA1_c07500 at 774.343 kb on + strand, within PGA1_c07500 at 774.356 kb on - strand, within PGA1_c07500 at 774.356 kb on - strand, within PGA1_c07500 at 774.362 kb on + strand, within PGA1_c07500 at 774.370 kb on - strand, within PGA1_c07500 at 774.373 kb on + strand, within PGA1_c07500 at 774.420 kb on + strand, within PGA1_c07500 at 774.462 kb on - strand, within PGA1_c07500 at 774.502 kb on + strand, within PGA1_c07500 at 774.502 kb on + strand, within PGA1_c07500 at 774.577 kb on + strand, within PGA1_c07500 at 774.585 kb on - strand, within PGA1_c07500 at 774.631 kb on + strand, within PGA1_c07500 at 774.631 kb on + strand, within PGA1_c07500 at 774.639 kb on - strand, within PGA1_c07500 at 774.661 kb on - strand, within PGA1_c07500 at 774.669 kb on - strand, within PGA1_c07500 at 774.676 kb on + strand, within PGA1_c07500 at 774.684 kb on - strand, within PGA1_c07500 at 774.727 kb on + strand at 774.742 kb on - strand at 774.742 kb on - strand at 774.749 kb on + strand at 774.781 kb on - strand at 774.828 kb on + strand at 774.831 kb on - strand at 774.837 kb on - strand at 774.849 kb on + strand at 774.897 kb on + strand at 774.956 kb on - strand at 774.979 kb on - strand at 775.020 kb on - strand at 775.037 kb on - strand at 775.045 kb on + strand at 775.045 kb on + strand at 775.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM remove 772,815 - +0.4 772,817 + +0.1 772,817 + +0.4 772,819 - +0.4 772,909 - +0.2 772,937 + PGA1_c07480 0.10 +0.9 772,972 + PGA1_c07480 0.14 +1.0 773,019 + PGA1_c07480 0.19 -0.4 773,024 + PGA1_c07480 0.19 -2.0 773,032 - PGA1_c07480 0.20 -1.0 773,053 + PGA1_c07480 0.22 -1.0 773,078 + PGA1_c07480 0.25 -2.9 773,090 - PGA1_c07480 0.26 -2.2 773,135 + PGA1_c07480 0.31 +0.1 773,135 + PGA1_c07480 0.31 -0.8 773,143 - PGA1_c07480 0.32 -0.3 773,143 - PGA1_c07480 0.32 -1.0 773,161 - PGA1_c07480 0.34 +0.7 773,200 + PGA1_c07480 0.38 +1.0 773,200 + PGA1_c07480 0.38 +1.3 773,298 + PGA1_c07480 0.48 +0.6 773,298 + PGA1_c07480 0.48 -0.3 773,301 - PGA1_c07480 0.48 -0.2 773,301 - PGA1_c07480 0.48 -1.6 773,326 - PGA1_c07480 0.51 -0.5 773,352 - PGA1_c07480 0.53 -1.2 773,352 - PGA1_c07480 0.53 +0.6 773,362 - PGA1_c07480 0.55 +0.2 773,379 + PGA1_c07480 0.56 -1.1 773,382 + PGA1_c07480 0.57 +0.9 773,409 + PGA1_c07480 0.59 -0.6 773,562 + PGA1_c07480 0.75 -0.3 773,582 + PGA1_c07480 0.77 -0.0 773,586 + PGA1_c07480 0.78 +1.1 773,586 + PGA1_c07480 0.78 +0.3 773,587 + PGA1_c07480 0.78 -2.6 773,587 + PGA1_c07480 0.78 -0.4 773,587 + PGA1_c07480 0.78 -0.8 773,697 + PGA1_c07480 0.89 +0.3 773,731 + +1.3 773,761 + -0.4 773,773 + +0.5 773,797 + -0.4 773,805 - +0.4 773,817 - +1.2 773,913 + PGA1_c07490 0.40 -1.4 774,002 - PGA1_c07490 0.70 -0.9 774,069 + -0.2 774,086 + +0.1 774,107 - +0.4 774,166 + +0.1 774,172 + -1.4 774,172 + -1.5 774,174 - +1.0 774,180 - +0.6 774,180 - +0.1 774,180 - -0.7 774,180 - +1.3 774,213 - +1.5 774,229 + -0.9 774,229 + -0.5 774,237 - +1.0 774,247 - PGA1_c07500 0.11 -1.0 774,247 - PGA1_c07500 0.11 -0.0 774,310 + PGA1_c07500 0.22 +0.2 774,310 + PGA1_c07500 0.22 +1.0 774,310 + PGA1_c07500 0.22 +0.5 774,311 + PGA1_c07500 0.22 +2.0 774,318 - PGA1_c07500 0.23 +0.3 774,318 - PGA1_c07500 0.23 +0.7 774,338 + PGA1_c07500 0.27 -0.5 774,338 + PGA1_c07500 0.27 +0.1 774,341 - PGA1_c07500 0.27 +0.7 774,343 + PGA1_c07500 0.28 +1.0 774,356 - PGA1_c07500 0.30 +0.4 774,356 - PGA1_c07500 0.30 +0.8 774,362 + PGA1_c07500 0.31 -0.5 774,370 - PGA1_c07500 0.32 -1.7 774,373 + PGA1_c07500 0.33 -0.5 774,420 + PGA1_c07500 0.41 +1.6 774,462 - PGA1_c07500 0.49 +0.2 774,502 + PGA1_c07500 0.56 +1.4 774,502 + PGA1_c07500 0.56 +0.3 774,577 + PGA1_c07500 0.69 -1.2 774,585 - PGA1_c07500 0.70 -1.0 774,631 + PGA1_c07500 0.78 +0.8 774,631 + PGA1_c07500 0.78 +1.1 774,639 - PGA1_c07500 0.80 -1.3 774,661 - PGA1_c07500 0.84 +0.8 774,669 - PGA1_c07500 0.85 -0.0 774,676 + PGA1_c07500 0.86 +0.9 774,684 - PGA1_c07500 0.88 +0.6 774,727 + +1.0 774,742 - -1.5 774,742 - +0.6 774,749 + +0.6 774,781 - +0.1 774,828 + +0.2 774,831 - +0.5 774,837 - -0.5 774,849 + -0.2 774,897 + -0.0 774,956 - -0.9 774,979 - -0.5 775,020 - +0.6 775,037 - -0.8 775,045 + +0.5 775,045 + +1.3 775,064 - -0.0
Or see this region's nucleotide sequence