Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_72 and HP15_73 are separated by 846 nucleotides HP15_73 and HP15_74 are separated by 278 nucleotides HP15_74 and HP15_75 overlap by 4 nucleotides
HP15_72: HP15_72 - conserved hypothetical protein, at 79,782 to 80,045
_72
HP15_73: HP15_73 - hypothetical protein, at 80,892 to 81,146
_73
HP15_74: HP15_74 - hypothetical protein, at 81,425 to 81,820
_74
HP15_75: HP15_75 - conserved hypothetical protein, at 81,817 to 84,126
_75
Position (kb)
80
81
82 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 79.954 kb on - strand, within HP15_72 at 80.050 kb on + strand at 80.050 kb on + strand at 80.050 kb on + strand at 80.053 kb on + strand at 80.053 kb on + strand at 80.110 kb on + strand at 80.111 kb on + strand at 80.130 kb on + strand at 80.138 kb on - strand at 80.267 kb on + strand at 80.309 kb on + strand at 80.347 kb on + strand at 80.419 kb on + strand at 80.419 kb on + strand at 80.427 kb on - strand at 80.444 kb on + strand at 80.444 kb on + strand at 80.713 kb on + strand at 80.713 kb on + strand at 80.721 kb on + strand at 80.721 kb on - strand at 80.721 kb on - strand at 80.771 kb on - strand at 80.781 kb on - strand at 80.786 kb on - strand at 80.815 kb on + strand at 80.912 kb on - strand at 80.921 kb on - strand, within HP15_73 at 80.921 kb on - strand, within HP15_73 at 80.935 kb on + strand, within HP15_73 at 80.945 kb on + strand, within HP15_73 at 80.965 kb on + strand, within HP15_73 at 80.973 kb on - strand, within HP15_73 at 80.973 kb on - strand, within HP15_73 at 81.050 kb on + strand, within HP15_73 at 81.135 kb on + strand at 81.143 kb on - strand at 81.195 kb on + strand at 81.202 kb on - strand at 81.292 kb on + strand at 81.293 kb on - strand at 81.345 kb on + strand at 81.423 kb on + strand at 81.463 kb on + strand at 81.463 kb on + strand at 81.470 kb on + strand, within HP15_74 at 81.497 kb on - strand, within HP15_74 at 81.507 kb on - strand, within HP15_74 at 81.513 kb on + strand, within HP15_74 at 81.534 kb on + strand, within HP15_74 at 81.559 kb on - strand, within HP15_74 at 81.559 kb on - strand, within HP15_74 at 81.579 kb on + strand, within HP15_74 at 81.611 kb on - strand, within HP15_74 at 81.759 kb on - strand, within HP15_74 at 81.777 kb on - strand, within HP15_74 at 81.851 kb on - strand at 81.864 kb on + strand at 81.951 kb on - strand at 81.959 kb on - strand at 82.024 kb on + strand at 82.113 kb on + strand, within HP15_75
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 79,954 - HP15_72 0.65 +1.2 80,050 + -1.6 80,050 + +2.5 80,050 + +0.1 80,053 + -0.4 80,053 + +0.4 80,110 + +0.0 80,111 + -0.4 80,130 + -0.2 80,138 - -0.0 80,267 + +0.1 80,309 + +0.8 80,347 + -0.5 80,419 + +0.5 80,419 + -1.1 80,427 - -0.6 80,444 + -1.4 80,444 + +1.0 80,713 + -0.8 80,713 + +1.2 80,721 + +0.2 80,721 - -0.1 80,721 - -0.0 80,771 - +0.7 80,781 - +1.0 80,786 - +0.2 80,815 + -0.1 80,912 - +0.4 80,921 - HP15_73 0.11 -2.0 80,921 - HP15_73 0.11 -0.2 80,935 + HP15_73 0.17 +0.8 80,945 + HP15_73 0.21 +0.2 80,965 + HP15_73 0.29 -1.2 80,973 - HP15_73 0.32 +0.3 80,973 - HP15_73 0.32 -0.4 81,050 + HP15_73 0.62 +0.7 81,135 + -0.0 81,143 - +0.5 81,195 + -0.6 81,202 - +0.2 81,292 + +0.5 81,293 - -2.8 81,345 + -0.5 81,423 + -0.4 81,463 + -0.8 81,463 + +0.2 81,470 + HP15_74 0.11 +1.3 81,497 - HP15_74 0.18 +2.8 81,507 - HP15_74 0.21 +0.4 81,513 + HP15_74 0.22 +0.4 81,534 + HP15_74 0.28 +0.1 81,559 - HP15_74 0.34 -1.3 81,559 - HP15_74 0.34 +0.5 81,579 + HP15_74 0.39 +0.5 81,611 - HP15_74 0.47 +0.2 81,759 - HP15_74 0.84 -0.4 81,777 - HP15_74 0.89 -0.3 81,851 - +0.2 81,864 + -0.1 81,951 - +1.2 81,959 - +0.4 82,024 + -0.6 82,113 + HP15_75 0.13 -0.3
Or see this region's nucleotide sequence