Experiment: m.b. syringaldehyde 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06730 and PGA1_c06740 are separated by 32 nucleotides PGA1_c06740 and PGA1_c06750 are separated by 123 nucleotides PGA1_c06750 and PGA1_c06760 are separated by 155 nucleotides PGA1_c06760 and PGA1_c06770 are separated by 232 nucleotides
PGA1_c06730: PGA1_c06730 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 690,884 to 692,806
_c06730
PGA1_c06740: PGA1_c06740 - octanoyltransferase LipB, at 692,839 to 693,510
_c06740
PGA1_c06750: PGA1_c06750 - Putative peptidoglycan binding domain., at 693,634 to 695,295
_c06750
PGA1_c06760: PGA1_c06760 - tRNA-Leu, at 695,451 to 695,537
_c06760
PGA1_c06770: PGA1_c06770 - hypothetical protein, at 695,770 to 696,009
_c06770
Position (kb) 693
694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 692.655 kb on + strand at 692.660 kb on + strand at 692.663 kb on - strand at 692.663 kb on - strand at 692.665 kb on - strand at 692.694 kb on + strand at 692.725 kb on + strand at 692.738 kb on - strand at 692.740 kb on + strand at 692.806 kb on + strand at 692.806 kb on + strand at 692.806 kb on + strand at 692.836 kb on + strand at 692.844 kb on - strand at 692.857 kb on - strand at 692.862 kb on - strand at 693.539 kb on + strand at 693.544 kb on + strand at 693.544 kb on + strand at 693.544 kb on + strand at 693.544 kb on + strand at 693.552 kb on - strand at 693.552 kb on - strand at 693.552 kb on - strand at 693.594 kb on + strand at 693.673 kb on + strand at 693.676 kb on - strand at 693.676 kb on - strand at 693.676 kb on - strand at 693.681 kb on - strand at 693.683 kb on + strand at 693.683 kb on + strand at 693.714 kb on + strand at 693.714 kb on + strand at 693.749 kb on + strand at 693.757 kb on - strand at 693.769 kb on + strand at 693.777 kb on - strand at 693.829 kb on + strand, within PGA1_c06750 at 693.829 kb on + strand, within PGA1_c06750 at 693.837 kb on - strand, within PGA1_c06750 at 693.837 kb on - strand, within PGA1_c06750 at 693.892 kb on - strand, within PGA1_c06750 at 693.901 kb on - strand, within PGA1_c06750 at 693.903 kb on - strand, within PGA1_c06750 at 693.930 kb on + strand, within PGA1_c06750 at 693.940 kb on + strand, within PGA1_c06750 at 693.948 kb on - strand, within PGA1_c06750 at 694.001 kb on - strand, within PGA1_c06750 at 694.007 kb on + strand, within PGA1_c06750 at 694.008 kb on - strand, within PGA1_c06750 at 694.025 kb on + strand, within PGA1_c06750 at 694.043 kb on - strand, within PGA1_c06750 at 694.103 kb on - strand, within PGA1_c06750 at 694.104 kb on + strand, within PGA1_c06750 at 694.112 kb on + strand, within PGA1_c06750 at 694.144 kb on + strand, within PGA1_c06750 at 694.152 kb on - strand, within PGA1_c06750 at 694.205 kb on - strand, within PGA1_c06750 at 694.205 kb on - strand, within PGA1_c06750 at 694.213 kb on + strand, within PGA1_c06750 at 694.246 kb on + strand, within PGA1_c06750 at 694.286 kb on + strand, within PGA1_c06750 at 694.294 kb on - strand, within PGA1_c06750 at 694.336 kb on - strand, within PGA1_c06750 at 694.341 kb on - strand, within PGA1_c06750 at 694.341 kb on - strand, within PGA1_c06750 at 694.341 kb on - strand, within PGA1_c06750 at 694.462 kb on + strand, within PGA1_c06750 at 694.470 kb on - strand, within PGA1_c06750 at 694.470 kb on - strand, within PGA1_c06750 at 694.470 kb on - strand, within PGA1_c06750 at 694.525 kb on + strand, within PGA1_c06750 at 694.553 kb on - strand, within PGA1_c06750 at 694.686 kb on - strand, within PGA1_c06750 at 694.699 kb on - strand, within PGA1_c06750 at 694.731 kb on + strand, within PGA1_c06750 at 694.731 kb on + strand, within PGA1_c06750 at 694.739 kb on - strand, within PGA1_c06750 at 694.739 kb on - strand, within PGA1_c06750 at 694.765 kb on + strand, within PGA1_c06750 at 694.837 kb on - strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.848 kb on + strand, within PGA1_c06750 at 694.851 kb on - strand, within PGA1_c06750 at 694.855 kb on - strand, within PGA1_c06750 at 694.856 kb on - strand, within PGA1_c06750 at 694.856 kb on - strand, within PGA1_c06750 at 694.869 kb on - strand, within PGA1_c06750 at 694.926 kb on + strand, within PGA1_c06750 at 695.014 kb on + strand, within PGA1_c06750 at 695.014 kb on + strand, within PGA1_c06750 at 695.022 kb on - strand, within PGA1_c06750 at 695.022 kb on - strand, within PGA1_c06750 at 695.030 kb on + strand, within PGA1_c06750 at 695.038 kb on - strand, within PGA1_c06750 at 695.075 kb on - strand, within PGA1_c06750 at 695.079 kb on + strand, within PGA1_c06750 at 695.080 kb on + strand, within PGA1_c06750 at 695.081 kb on - strand, within PGA1_c06750 at 695.110 kb on + strand, within PGA1_c06750 at 695.124 kb on + strand, within PGA1_c06750 at 695.199 kb on + strand at 695.199 kb on + strand at 695.199 kb on + strand at 695.207 kb on - strand at 695.207 kb on - strand at 695.264 kb on + strand at 695.272 kb on + strand at 695.334 kb on + strand at 695.339 kb on + strand at 695.585 kb on - strand at 695.586 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.620 kb on + strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.628 kb on - strand at 695.629 kb on - strand at 695.738 kb on - strand at 695.777 kb on + strand at 695.777 kb on + strand at 695.777 kb on + strand at 695.779 kb on - strand at 695.785 kb on + strand at 695.785 kb on + strand at 695.785 kb on - strand at 695.785 kb on - strand at 695.785 kb on - strand at 695.793 kb on - strand at 695.793 kb on - strand at 695.795 kb on + strand, within PGA1_c06770 at 695.795 kb on - strand, within PGA1_c06770 at 695.867 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.918 kb on + strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.926 kb on - strand, within PGA1_c06770 at 695.944 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.949 kb on + strand, within PGA1_c06770 at 695.952 kb on - strand, within PGA1_c06770 at 695.952 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 695.957 kb on - strand, within PGA1_c06770 at 696.067 kb on - strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.069 kb on + strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.077 kb on - strand at 696.082 kb on - strand at 696.104 kb on + strand at 696.172 kb on - strand at 696.186 kb on - strand at 696.227 kb on + strand at 696.262 kb on + strand at 696.295 kb on + strand at 696.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM remove 692,655 + -2.8 692,660 + -0.0 692,663 - -1.0 692,663 - -2.9 692,665 - +0.5 692,694 + +0.5 692,725 + -0.0 692,738 - -0.0 692,740 + +0.7 692,806 + -2.4 692,806 + -2.9 692,806 + -3.1 692,836 + -0.6 692,844 - +0.4 692,857 - -0.5 692,862 - +0.3 693,539 + +0.5 693,544 + -0.6 693,544 + -0.6 693,544 + -1.3 693,544 + -0.0 693,552 - -0.0 693,552 - -0.8 693,552 - +0.6 693,594 + -0.6 693,673 + -0.2 693,676 - +0.5 693,676 - +2.0 693,676 - +1.3 693,681 - +0.1 693,683 + -0.6 693,683 + -0.3 693,714 + -1.6 693,714 + -1.7 693,749 + -0.5 693,757 - +0.1 693,769 + -0.6 693,777 - -0.8 693,829 + PGA1_c06750 0.12 -0.4 693,829 + PGA1_c06750 0.12 +0.6 693,837 - PGA1_c06750 0.12 -0.9 693,837 - PGA1_c06750 0.12 -2.2 693,892 - PGA1_c06750 0.16 +0.4 693,901 - PGA1_c06750 0.16 -1.9 693,903 - PGA1_c06750 0.16 +0.1 693,930 + PGA1_c06750 0.18 -2.0 693,940 + PGA1_c06750 0.18 +0.6 693,948 - PGA1_c06750 0.19 -2.3 694,001 - PGA1_c06750 0.22 +0.5 694,007 + PGA1_c06750 0.22 -0.5 694,008 - PGA1_c06750 0.23 -1.4 694,025 + PGA1_c06750 0.24 -1.9 694,043 - PGA1_c06750 0.25 +0.7 694,103 - PGA1_c06750 0.28 -0.4 694,104 + PGA1_c06750 0.28 -0.8 694,112 + PGA1_c06750 0.29 +0.0 694,144 + PGA1_c06750 0.31 +0.6 694,152 - PGA1_c06750 0.31 -0.9 694,205 - PGA1_c06750 0.34 -0.2 694,205 - PGA1_c06750 0.34 -2.9 694,213 + PGA1_c06750 0.35 -1.2 694,246 + PGA1_c06750 0.37 +1.0 694,286 + PGA1_c06750 0.39 -0.7 694,294 - PGA1_c06750 0.40 -0.3 694,336 - PGA1_c06750 0.42 -2.2 694,341 - PGA1_c06750 0.43 -0.0 694,341 - PGA1_c06750 0.43 -0.9 694,341 - PGA1_c06750 0.43 -0.3 694,462 + PGA1_c06750 0.50 -1.3 694,470 - PGA1_c06750 0.50 +0.2 694,470 - PGA1_c06750 0.50 -0.5 694,470 - PGA1_c06750 0.50 -0.1 694,525 + PGA1_c06750 0.54 -0.2 694,553 - PGA1_c06750 0.55 +0.5 694,686 - PGA1_c06750 0.63 -1.4 694,699 - PGA1_c06750 0.64 +1.0 694,731 + PGA1_c06750 0.66 -1.1 694,731 + PGA1_c06750 0.66 -0.2 694,739 - PGA1_c06750 0.66 -1.6 694,739 - PGA1_c06750 0.66 -0.4 694,765 + PGA1_c06750 0.68 -1.6 694,837 - PGA1_c06750 0.72 -1.4 694,848 + PGA1_c06750 0.73 +0.3 694,848 + PGA1_c06750 0.73 +2.3 694,848 + PGA1_c06750 0.73 +0.1 694,851 - PGA1_c06750 0.73 -1.4 694,855 - PGA1_c06750 0.73 -0.5 694,856 - PGA1_c06750 0.74 -0.0 694,856 - PGA1_c06750 0.74 -1.3 694,869 - PGA1_c06750 0.74 -1.7 694,926 + PGA1_c06750 0.78 -1.4 695,014 + PGA1_c06750 0.83 -1.9 695,014 + PGA1_c06750 0.83 +0.7 695,022 - PGA1_c06750 0.84 -0.3 695,022 - PGA1_c06750 0.84 -1.2 695,030 + PGA1_c06750 0.84 +0.4 695,038 - PGA1_c06750 0.84 -0.6 695,075 - PGA1_c06750 0.87 -0.6 695,079 + PGA1_c06750 0.87 +0.6 695,080 + PGA1_c06750 0.87 -0.8 695,081 - PGA1_c06750 0.87 +1.7 695,110 + PGA1_c06750 0.89 -1.9 695,124 + PGA1_c06750 0.90 -1.0 695,199 + -0.4 695,199 + -0.2 695,199 + +1.8 695,207 - -2.4 695,207 - -1.7 695,264 + -1.4 695,272 + -0.6 695,334 + +0.6 695,339 + -1.1 695,585 - -0.0 695,586 + -1.6 695,620 + +0.3 695,620 + -0.6 695,620 + -0.4 695,628 - -1.5 695,628 - -0.9 695,628 - -2.4 695,628 - +1.0 695,628 - -1.5 695,628 - -0.6 695,628 - -1.4 695,628 - -0.7 695,629 - +0.7 695,738 - +1.0 695,777 + -0.9 695,777 + -0.7 695,777 + +1.4 695,779 - -0.2 695,785 + -0.2 695,785 + +2.0 695,785 - -1.5 695,785 - -0.5 695,785 - +0.4 695,793 - +0.2 695,793 - -2.7 695,795 + PGA1_c06770 0.10 +0.1 695,795 - PGA1_c06770 0.10 +1.1 695,867 + PGA1_c06770 0.40 -1.0 695,918 + PGA1_c06770 0.62 -1.5 695,918 + PGA1_c06770 0.62 -0.3 695,918 + PGA1_c06770 0.62 -3.2 695,918 + PGA1_c06770 0.62 -0.9 695,918 + PGA1_c06770 0.62 -0.0 695,918 + PGA1_c06770 0.62 -0.0 695,926 - PGA1_c06770 0.65 -1.0 695,926 - PGA1_c06770 0.65 +0.2 695,926 - PGA1_c06770 0.65 -0.9 695,926 - PGA1_c06770 0.65 -2.7 695,926 - PGA1_c06770 0.65 -0.9 695,944 + PGA1_c06770 0.72 +0.7 695,949 + PGA1_c06770 0.75 -2.6 695,949 + PGA1_c06770 0.75 +0.1 695,949 + PGA1_c06770 0.75 -1.3 695,949 + PGA1_c06770 0.75 -0.0 695,949 + PGA1_c06770 0.75 -1.0 695,949 + PGA1_c06770 0.75 -1.4 695,949 + PGA1_c06770 0.75 -1.2 695,949 + PGA1_c06770 0.75 +0.4 695,949 + PGA1_c06770 0.75 +0.1 695,949 + PGA1_c06770 0.75 +0.5 695,949 + PGA1_c06770 0.75 -0.8 695,949 + PGA1_c06770 0.75 -2.4 695,949 + PGA1_c06770 0.75 -2.2 695,949 + PGA1_c06770 0.75 -2.5 695,949 + PGA1_c06770 0.75 -1.0 695,949 + PGA1_c06770 0.75 -0.6 695,949 + PGA1_c06770 0.75 +0.8 695,952 - PGA1_c06770 0.76 -1.6 695,952 - PGA1_c06770 0.76 -0.6 695,957 - PGA1_c06770 0.78 -1.6 695,957 - PGA1_c06770 0.78 -2.0 695,957 - PGA1_c06770 0.78 +0.6 695,957 - PGA1_c06770 0.78 -0.0 695,957 - PGA1_c06770 0.78 -1.4 696,067 - -1.4 696,069 + -1.0 696,069 + -1.4 696,069 + -1.9 696,069 + -1.6 696,069 + +0.4 696,069 + -0.4 696,069 + -1.8 696,069 + -2.0 696,069 + -0.4 696,077 - +0.3 696,077 - -1.8 696,077 - -1.5 696,077 - -1.0 696,077 - -0.9 696,082 - -0.4 696,104 + -0.5 696,172 - -1.4 696,186 - -0.8 696,227 + -2.0 696,262 + -0.0 696,295 + -1.0 696,295 + +0.5
Or see this region's nucleotide sequence