Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06480

Experiment: m.b. syringaldehyde 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06470 and PGA1_c06480 are separated by 33 nucleotidesPGA1_c06480 and PGA1_c06490 are separated by 121 nucleotides PGA1_c06470: PGA1_c06470 - glycyl-tRNA synthetase alpha subunit, at 662,267 to 663,196 _c06470 PGA1_c06480: PGA1_c06480 - hypothetical protein, at 663,230 to 663,763 _c06480 PGA1_c06490: PGA1_c06490 - sodium/glutamate symport carrier protein GltS, at 663,885 to 665,093 _c06490 Position (kb) 663 664Strain fitness (log2 ratio) -2 -1 0 1at 663.191 kb on + strandat 663.227 kb on + strandat 663.302 kb on - strand, within PGA1_c06480at 663.698 kb on + strand, within PGA1_c06480at 663.698 kb on + strand, within PGA1_c06480at 663.729 kb on + strandat 663.757 kb on - strandat 663.771 kb on + strandat 663.801 kb on - strandat 663.834 kb on - strandat 663.861 kb on + strandat 663.861 kb on + strandat 663.861 kb on + strandat 663.861 kb on + strandat 663.869 kb on - strandat 663.896 kb on + strandat 663.896 kb on + strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.904 kb on - strandat 663.966 kb on - strandat 663.978 kb on + strandat 663.978 kb on + strandat 664.046 kb on + strand, within PGA1_c06490at 664.054 kb on + strand, within PGA1_c06490at 664.062 kb on - strand, within PGA1_c06490at 664.285 kb on - strand, within PGA1_c06490at 664.303 kb on - strand, within PGA1_c06490at 664.350 kb on + strand, within PGA1_c06490at 664.390 kb on + strand, within PGA1_c06490at 664.557 kb on - strand, within PGA1_c06490at 664.605 kb on - strand, within PGA1_c06490at 664.605 kb on - strand, within PGA1_c06490at 664.725 kb on - strand, within PGA1_c06490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM
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663,191 + +1.1
663,227 + -0.5
663,302 - PGA1_c06480 0.13 -1.5
663,698 + PGA1_c06480 0.88 -1.4
663,698 + PGA1_c06480 0.88 +0.3
663,729 + -0.3
663,757 - +0.1
663,771 + -0.3
663,801 - -1.6
663,834 - +0.4
663,861 + +0.5
663,861 + -0.3
663,861 + -0.7
663,861 + +0.8
663,869 - -0.0
663,896 + +0.0
663,896 + +0.2
663,904 - +1.0
663,904 - +0.7
663,904 - -1.9
663,904 - -1.1
663,904 - +0.2
663,966 - -0.3
663,978 + +0.4
663,978 + +0.9
664,046 + PGA1_c06490 0.13 -0.6
664,054 + PGA1_c06490 0.14 +1.1
664,062 - PGA1_c06490 0.15 +0.9
664,285 - PGA1_c06490 0.33 -0.5
664,303 - PGA1_c06490 0.35 -1.4
664,350 + PGA1_c06490 0.38 +1.4
664,390 + PGA1_c06490 0.42 -0.3
664,557 - PGA1_c06490 0.56 +0.5
664,605 - PGA1_c06490 0.60 +0.1
664,605 - PGA1_c06490 0.60 -0.0
664,725 - PGA1_c06490 0.69 +0.6

Or see this region's nucleotide sequence