Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_520 and HP15_521 are separated by 66 nucleotides HP15_521 and HP15_522 are separated by 6 nucleotides HP15_522 and HP15_523 are separated by 95 nucleotides
HP15_520: HP15_520 - type IV pilus biogenesis protein, at 531,968 to 535,465
_520
HP15_521: HP15_521 - fimbrial protein pilin, at 535,532 to 535,894
_521
HP15_522: HP15_522 - type IV pilus biogenesis protein-like protein, at 535,901 to 536,458
_522
HP15_523: HP15_523 - two component, sigma54 specific, transcriptional regulator, Fis family, at 536,554 to 537,942
_523
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 534.911 kb on + strand, within HP15_520 at 534.967 kb on + strand, within HP15_520 at 534.975 kb on - strand, within HP15_520 at 534.993 kb on + strand, within HP15_520 at 534.993 kb on + strand, within HP15_520 at 535.101 kb on + strand, within HP15_520 at 535.191 kb on + strand at 535.199 kb on - strand at 535.199 kb on - strand at 535.315 kb on + strand at 535.323 kb on - strand at 535.392 kb on - strand at 535.641 kb on - strand, within HP15_521 at 535.857 kb on - strand, within HP15_521 at 535.974 kb on - strand, within HP15_522 at 536.209 kb on - strand, within HP15_522 at 536.317 kb on - strand, within HP15_522 at 536.541 kb on + strand at 536.834 kb on - strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.851 kb on - strand, within HP15_523 at 536.919 kb on - strand, within HP15_523 at 536.919 kb on - strand, within HP15_523 at 537.031 kb on + strand, within HP15_523 at 537.116 kb on - strand, within HP15_523 at 537.143 kb on + strand, within HP15_523 at 537.149 kb on - strand, within HP15_523 at 537.238 kb on + strand, within HP15_523
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 534,911 + HP15_520 0.84 -1.0 534,967 + HP15_520 0.86 +0.6 534,975 - HP15_520 0.86 -0.6 534,993 + HP15_520 0.86 +0.2 534,993 + HP15_520 0.86 +0.5 535,101 + HP15_520 0.90 -1.3 535,191 + -0.4 535,199 - -3.2 535,199 - -0.2 535,315 + -1.6 535,323 - +0.9 535,392 - -2.2 535,641 - HP15_521 0.30 +0.8 535,857 - HP15_521 0.90 -0.3 535,974 - HP15_522 0.13 -1.0 536,209 - HP15_522 0.55 +0.0 536,317 - HP15_522 0.75 +0.1 536,541 + +0.3 536,834 - HP15_523 0.20 +1.2 536,841 + HP15_523 0.21 -1.2 536,841 + HP15_523 0.21 +0.0 536,841 + HP15_523 0.21 -0.1 536,849 - HP15_523 0.21 +0.2 536,849 - HP15_523 0.21 -0.3 536,849 - HP15_523 0.21 +0.3 536,851 - HP15_523 0.21 -0.1 536,919 - HP15_523 0.26 -0.2 536,919 - HP15_523 0.26 +0.2 537,031 + HP15_523 0.34 +0.3 537,116 - HP15_523 0.40 +0.4 537,143 + HP15_523 0.42 -0.5 537,149 - HP15_523 0.43 -0.5 537,238 + HP15_523 0.49 -0.6
Or see this region's nucleotide sequence