Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g174 and HP15_p187g175 are separated by 195 nucleotides HP15_p187g175 and HP15_p187g176 are separated by 148 nucleotides HP15_p187g176 and HP15_p187g177 are separated by 648 nucleotides
HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906
_p187g174
HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698
_p187g175
HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196
_p187g176
HP15_p187g177: HP15_p187g177 - carboxyl-terminal protease-like protein, at 184,845 to 186,347
_p187g177
Position (kb) 182
183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 181.906 kb on - strand at 181.999 kb on + strand at 182.007 kb on - strand at 182.059 kb on + strand at 182.069 kb on + strand at 182.069 kb on + strand at 182.077 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.083 kb on + strand at 182.086 kb on - strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.091 kb on - strand at 182.091 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.098 kb on - strand at 182.100 kb on + strand at 182.136 kb on + strand at 182.210 kb on + strand, within HP15_p187g175 at 182.210 kb on + strand, within HP15_p187g175 at 182.251 kb on - strand, within HP15_p187g175 at 182.497 kb on + strand, within HP15_p187g175 at 182.572 kb on + strand, within HP15_p187g175 at 182.578 kb on + strand, within HP15_p187g175 at 182.714 kb on + strand at 182.722 kb on - strand at 182.906 kb on + strand at 182.906 kb on + strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.924 kb on - strand at 182.937 kb on - strand at 182.969 kb on + strand at 182.983 kb on - strand, within HP15_p187g176 at 183.010 kb on + strand, within HP15_p187g176 at 183.010 kb on - strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.059 kb on + strand, within HP15_p187g176 at 183.067 kb on - strand, within HP15_p187g176 at 183.072 kb on + strand, within HP15_p187g176 at 183.101 kb on - strand, within HP15_p187g176 at 183.149 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.233 kb on - strand, within HP15_p187g176 at 183.269 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.277 kb on - strand, within HP15_p187g176 at 183.314 kb on - strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.328 kb on - strand, within HP15_p187g176 at 183.337 kb on - strand, within HP15_p187g176 at 183.380 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.424 kb on - strand, within HP15_p187g176 at 183.453 kb on - strand, within HP15_p187g176 at 183.468 kb on - strand, within HP15_p187g176 at 183.503 kb on - strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.582 kb on + strand, within HP15_p187g176 at 183.582 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.638 kb on + strand, within HP15_p187g176 at 183.663 kb on + strand, within HP15_p187g176 at 183.704 kb on - strand, within HP15_p187g176 at 183.711 kb on + strand, within HP15_p187g176 at 183.745 kb on + strand, within HP15_p187g176 at 183.750 kb on + strand, within HP15_p187g176 at 183.820 kb on + strand, within HP15_p187g176 at 183.825 kb on + strand, within HP15_p187g176 at 183.825 kb on + strand, within HP15_p187g176 at 183.828 kb on - strand, within HP15_p187g176 at 183.828 kb on - strand, within HP15_p187g176 at 183.832 kb on + strand, within HP15_p187g176 at 183.833 kb on - strand, within HP15_p187g176 at 183.847 kb on + strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.894 kb on - strand, within HP15_p187g176 at 183.946 kb on - strand, within HP15_p187g176 at 183.986 kb on + strand, within HP15_p187g176 at 184.009 kb on + strand, within HP15_p187g176 at 184.082 kb on + strand at 184.090 kb on - strand at 184.113 kb on + strand at 184.133 kb on - strand at 184.133 kb on - strand at 184.136 kb on + strand at 184.151 kb on + strand at 184.151 kb on + strand at 184.159 kb on - strand at 184.174 kb on - strand at 184.239 kb on + strand at 184.258 kb on - strand at 184.265 kb on + strand at 184.308 kb on + strand at 184.308 kb on + strand at 184.308 kb on + strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.334 kb on - strand at 184.348 kb on - strand at 184.348 kb on - strand at 184.408 kb on + strand at 184.431 kb on - strand at 184.431 kb on - strand at 184.437 kb on - strand at 184.442 kb on + strand at 184.447 kb on + strand at 184.447 kb on + strand at 184.457 kb on + strand at 184.457 kb on + strand at 184.475 kb on - strand at 184.480 kb on - strand at 184.487 kb on + strand at 184.497 kb on + strand at 184.514 kb on + strand at 184.514 kb on - strand at 184.519 kb on - strand at 184.529 kb on - strand at 184.529 kb on - strand at 184.531 kb on - strand at 184.534 kb on + strand at 184.563 kb on + strand at 184.571 kb on - strand at 184.583 kb on + strand at 184.611 kb on - strand at 184.652 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.664 kb on + strand at 184.664 kb on + strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.672 kb on - strand at 184.689 kb on - strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.737 kb on + strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.745 kb on - strand at 184.745 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.752 kb on + strand at 184.752 kb on + strand at 184.781 kb on - strand at 184.828 kb on - strand at 184.835 kb on + strand at 184.835 kb on + strand at 184.835 kb on + strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.913 kb on + strand at 184.926 kb on + strand at 184.970 kb on - strand at 184.970 kb on - strand at 184.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 181,906 - -0.0 181,999 + -1.2 182,007 - -0.2 182,059 + +0.3 182,069 + -0.6 182,069 + +0.7 182,077 - +0.1 182,078 + -0.4 182,078 + +0.1 182,083 + +0.5 182,086 - +0.7 182,088 + +0.2 182,088 + -0.9 182,088 + -0.6 182,091 - +0.2 182,091 - -0.3 182,096 - +0.2 182,096 - +0.1 182,096 - +0.3 182,098 - -0.1 182,100 + +1.1 182,136 + -2.1 182,210 + HP15_p187g175 0.18 -0.9 182,210 + HP15_p187g175 0.18 -3.6 182,251 - HP15_p187g175 0.25 -1.7 182,497 + HP15_p187g175 0.66 -1.2 182,572 + HP15_p187g175 0.79 -0.7 182,578 + HP15_p187g175 0.80 -0.1 182,714 + -2.1 182,722 - -2.4 182,906 + -2.3 182,906 + -1.7 182,914 - -0.6 182,914 - -1.3 182,914 - -1.1 182,914 - -1.1 182,914 - -2.6 182,924 - -0.7 182,937 - -0.3 182,969 + -1.1 182,983 - HP15_p187g176 0.10 -0.5 183,010 + HP15_p187g176 0.12 -0.1 183,010 - HP15_p187g176 0.12 -0.7 183,011 + HP15_p187g176 0.12 -3.3 183,011 + HP15_p187g176 0.12 -1.3 183,054 + HP15_p187g176 0.15 -1.4 183,054 + HP15_p187g176 0.15 -1.9 183,059 + HP15_p187g176 0.16 -1.1 183,067 - HP15_p187g176 0.16 -1.4 183,072 + HP15_p187g176 0.17 -1.1 183,101 - HP15_p187g176 0.19 -2.1 183,149 + HP15_p187g176 0.22 +0.9 183,220 + HP15_p187g176 0.28 -0.8 183,220 + HP15_p187g176 0.28 -1.1 183,233 - HP15_p187g176 0.29 -0.8 183,269 + HP15_p187g176 0.31 -1.2 183,271 + HP15_p187g176 0.31 -2.6 183,271 + HP15_p187g176 0.31 -0.9 183,271 + HP15_p187g176 0.31 -2.1 183,277 - HP15_p187g176 0.32 -0.7 183,314 - HP15_p187g176 0.35 +0.9 183,320 + HP15_p187g176 0.35 -1.7 183,320 + HP15_p187g176 0.35 -0.7 183,328 - HP15_p187g176 0.36 -1.3 183,337 - HP15_p187g176 0.36 -0.1 183,380 + HP15_p187g176 0.39 -0.8 183,416 + HP15_p187g176 0.42 -2.8 183,416 + HP15_p187g176 0.42 -0.8 183,416 + HP15_p187g176 0.42 -2.1 183,424 - HP15_p187g176 0.43 -1.4 183,453 - HP15_p187g176 0.45 -1.0 183,468 - HP15_p187g176 0.46 -1.5 183,503 - HP15_p187g176 0.49 -1.5 183,534 + HP15_p187g176 0.51 -0.4 183,534 + HP15_p187g176 0.51 -1.1 183,582 + HP15_p187g176 0.54 -0.1 183,582 - HP15_p187g176 0.54 +1.5 183,592 - HP15_p187g176 0.55 -1.4 183,592 - HP15_p187g176 0.55 -0.4 183,638 + HP15_p187g176 0.59 -2.0 183,663 + HP15_p187g176 0.60 -3.0 183,704 - HP15_p187g176 0.63 -1.1 183,711 + HP15_p187g176 0.64 -0.1 183,745 + HP15_p187g176 0.67 -1.7 183,750 + HP15_p187g176 0.67 -1.1 183,820 + HP15_p187g176 0.72 +0.3 183,825 + HP15_p187g176 0.72 -1.1 183,825 + HP15_p187g176 0.72 -1.4 183,828 - HP15_p187g176 0.73 -0.4 183,828 - HP15_p187g176 0.73 -0.3 183,832 + HP15_p187g176 0.73 -1.8 183,833 - HP15_p187g176 0.73 -1.7 183,847 + HP15_p187g176 0.74 -0.1 183,855 - HP15_p187g176 0.75 +0.9 183,855 - HP15_p187g176 0.75 +0.5 183,855 - HP15_p187g176 0.75 -1.1 183,894 - HP15_p187g176 0.78 -1.3 183,946 - HP15_p187g176 0.81 -1.1 183,986 + HP15_p187g176 0.84 -1.1 184,009 + HP15_p187g176 0.86 +0.0 184,082 + -2.2 184,090 - -2.4 184,113 + -0.6 184,133 - -1.7 184,133 - -2.1 184,136 + +2.2 184,151 + -1.2 184,151 + -2.3 184,159 - -0.5 184,174 - -0.1 184,239 + -2.5 184,258 - -0.0 184,265 + +0.0 184,308 + +0.6 184,308 + -0.6 184,308 + +1.1 184,316 - +0.1 184,316 - +0.2 184,316 - +0.2 184,316 - -0.3 184,334 - -0.1 184,348 - -0.1 184,348 - +0.1 184,408 + -0.4 184,431 - +0.9 184,431 - -1.1 184,437 - +0.0 184,442 + +0.7 184,447 + +0.6 184,447 + +0.8 184,457 + +0.2 184,457 + +0.2 184,475 - +0.3 184,480 - -0.0 184,487 + -0.1 184,497 + -0.6 184,514 + +0.6 184,514 - -0.5 184,519 - -0.4 184,529 - -0.3 184,529 - -0.4 184,531 - -0.4 184,534 + -0.9 184,563 + +0.1 184,571 - +0.5 184,583 + -0.6 184,611 - +0.1 184,652 + +0.0 184,657 + +0.4 184,657 + -0.2 184,657 + +0.5 184,657 + +0.4 184,657 + +0.6 184,664 + -1.9 184,664 + -1.5 184,665 - +1.5 184,665 - -0.4 184,665 - -0.1 184,665 - +0.1 184,672 - +1.6 184,689 - +0.5 184,732 + +0.2 184,732 + +0.2 184,732 + -0.6 184,732 + +0.0 184,732 + +0.1 184,732 + +0.8 184,737 + +0.1 184,740 - -0.3 184,740 - -0.6 184,740 - -1.9 184,740 - -0.6 184,745 - -0.6 184,745 - +0.6 184,750 - +0.2 184,750 - +0.8 184,750 - +0.0 184,750 - -0.9 184,752 + +2.2 184,752 + +0.1 184,781 - -0.2 184,828 - +0.2 184,835 + +0.9 184,835 + +1.7 184,835 + -0.6 184,843 - -0.3 184,843 - -0.7 184,843 - -0.2 184,843 - +0.1 184,913 + -1.1 184,926 + +0.8 184,970 - -0.2 184,970 - +0.6 184,970 - -0.0
Or see this region's nucleotide sequence