Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g174

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g173 and HP15_p187g174 are separated by 15 nucleotidesHP15_p187g174 and HP15_p187g175 are separated by 195 nucleotidesHP15_p187g175 and HP15_p187g176 are separated by 148 nucleotides HP15_p187g173: HP15_p187g173 - protein containing diguanylate cyclase, predicted domains, at 179,267 to 181,339 _p187g173 HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906 _p187g174 HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698 _p187g175 HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196 _p187g176 Position (kb) 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.359 kb on + strand, within HP15_p187g173at 180.360 kb on - strand, within HP15_p187g173at 180.368 kb on - strand, within HP15_p187g173at 180.387 kb on + strand, within HP15_p187g173at 180.397 kb on + strand, within HP15_p187g173at 180.405 kb on - strand, within HP15_p187g173at 180.405 kb on - strand, within HP15_p187g173at 180.439 kb on - strand, within HP15_p187g173at 180.448 kb on + strand, within HP15_p187g173at 180.487 kb on + strand, within HP15_p187g173at 180.487 kb on + strand, within HP15_p187g173at 180.495 kb on - strand, within HP15_p187g173at 180.495 kb on - strand, within HP15_p187g173at 180.495 kb on - strand, within HP15_p187g173at 180.497 kb on - strand, within HP15_p187g173at 180.499 kb on + strand, within HP15_p187g173at 180.537 kb on - strand, within HP15_p187g173at 180.578 kb on - strand, within HP15_p187g173at 180.632 kb on - strand, within HP15_p187g173at 180.632 kb on - strand, within HP15_p187g173at 180.637 kb on + strand, within HP15_p187g173at 180.637 kb on + strand, within HP15_p187g173at 180.647 kb on + strand, within HP15_p187g173at 180.647 kb on + strand, within HP15_p187g173at 180.654 kb on + strand, within HP15_p187g173at 180.657 kb on - strand, within HP15_p187g173at 180.662 kb on - strand, within HP15_p187g173at 180.664 kb on + strand, within HP15_p187g173at 180.664 kb on + strand, within HP15_p187g173at 180.664 kb on + strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.672 kb on - strand, within HP15_p187g173at 180.677 kb on - strand, within HP15_p187g173at 180.750 kb on - strand, within HP15_p187g173at 180.763 kb on - strand, within HP15_p187g173at 180.763 kb on - strand, within HP15_p187g173at 180.805 kb on + strand, within HP15_p187g173at 180.813 kb on - strand, within HP15_p187g173at 180.825 kb on + strand, within HP15_p187g173at 180.831 kb on - strand, within HP15_p187g173at 180.946 kb on + strand, within HP15_p187g173at 181.005 kb on + strand, within HP15_p187g173at 181.048 kb on + strand, within HP15_p187g173at 181.070 kb on + strand, within HP15_p187g173at 181.094 kb on + strand, within HP15_p187g173at 181.094 kb on + strand, within HP15_p187g173at 181.145 kb on - strandat 181.215 kb on + strandat 181.259 kb on + strandat 181.283 kb on - strandat 181.285 kb on + strandat 181.285 kb on + strandat 181.285 kb on + strandat 181.293 kb on - strandat 181.293 kb on - strandat 181.343 kb on + strandat 181.428 kb on - strand, within HP15_p187g174at 181.465 kb on - strand, within HP15_p187g174at 181.471 kb on + strand, within HP15_p187g174at 181.484 kb on + strand, within HP15_p187g174at 181.501 kb on + strand, within HP15_p187g174at 181.547 kb on + strand, within HP15_p187g174at 181.547 kb on + strand, within HP15_p187g174at 181.555 kb on - strand, within HP15_p187g174at 181.555 kb on - strand, within HP15_p187g174at 181.567 kb on + strand, within HP15_p187g174at 181.570 kb on - strand, within HP15_p187g174at 181.575 kb on + strand, within HP15_p187g174at 181.667 kb on + strand, within HP15_p187g174at 181.685 kb on - strand, within HP15_p187g174at 181.699 kb on - strand, within HP15_p187g174at 181.699 kb on - strand, within HP15_p187g174at 181.717 kb on + strand, within HP15_p187g174at 181.726 kb on - strand, within HP15_p187g174at 181.906 kb on - strandat 181.999 kb on + strandat 182.007 kb on - strandat 182.059 kb on + strandat 182.069 kb on + strandat 182.069 kb on + strandat 182.077 kb on - strandat 182.078 kb on + strandat 182.078 kb on + strandat 182.083 kb on + strandat 182.086 kb on - strandat 182.088 kb on + strandat 182.088 kb on + strandat 182.088 kb on + strandat 182.091 kb on - strandat 182.091 kb on - strandat 182.096 kb on - strandat 182.096 kb on - strandat 182.096 kb on - strandat 182.098 kb on - strandat 182.100 kb on + strandat 182.136 kb on + strandat 182.210 kb on + strand, within HP15_p187g175at 182.210 kb on + strand, within HP15_p187g175at 182.251 kb on - strand, within HP15_p187g175at 182.497 kb on + strand, within HP15_p187g175at 182.572 kb on + strand, within HP15_p187g175at 182.578 kb on + strand, within HP15_p187g175at 182.714 kb on + strandat 182.722 kb on - strandat 182.906 kb on + strandat 182.906 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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180,359 + HP15_p187g173 0.53 +0.5
180,360 - HP15_p187g173 0.53 -0.3
180,368 - HP15_p187g173 0.53 +1.0
180,387 + HP15_p187g173 0.54 +0.5
180,397 + HP15_p187g173 0.55 +0.0
180,405 - HP15_p187g173 0.55 +0.8
180,405 - HP15_p187g173 0.55 -1.1
180,439 - HP15_p187g173 0.57 -1.5
180,448 + HP15_p187g173 0.57 +0.3
180,487 + HP15_p187g173 0.59 -0.5
180,487 + HP15_p187g173 0.59 +0.6
180,495 - HP15_p187g173 0.59 +0.1
180,495 - HP15_p187g173 0.59 -0.1
180,495 - HP15_p187g173 0.59 +0.6
180,497 - HP15_p187g173 0.59 +0.9
180,499 + HP15_p187g173 0.59 +0.5
180,537 - HP15_p187g173 0.61 +0.7
180,578 - HP15_p187g173 0.63 -0.1
180,632 - HP15_p187g173 0.66 -1.6
180,632 - HP15_p187g173 0.66 -0.5
180,637 + HP15_p187g173 0.66 +2.2
180,637 + HP15_p187g173 0.66 -0.2
180,647 + HP15_p187g173 0.67 -0.4
180,647 + HP15_p187g173 0.67 -0.6
180,654 + HP15_p187g173 0.67 +0.3
180,657 - HP15_p187g173 0.67 -0.1
180,662 - HP15_p187g173 0.67 +0.2
180,664 + HP15_p187g173 0.67 +0.7
180,664 + HP15_p187g173 0.67 +0.2
180,664 + HP15_p187g173 0.67 +0.8
180,672 - HP15_p187g173 0.68 -1.1
180,672 - HP15_p187g173 0.68 -0.3
180,672 - HP15_p187g173 0.68 +0.2
180,672 - HP15_p187g173 0.68 +0.3
180,672 - HP15_p187g173 0.68 +1.6
180,672 - HP15_p187g173 0.68 -0.1
180,672 - HP15_p187g173 0.68 -0.1
180,672 - HP15_p187g173 0.68 +0.6
180,677 - HP15_p187g173 0.68 -0.3
180,750 - HP15_p187g173 0.72 +0.5
180,763 - HP15_p187g173 0.72 -0.1
180,763 - HP15_p187g173 0.72 -0.6
180,805 + HP15_p187g173 0.74 -0.1
180,813 - HP15_p187g173 0.75 -0.1
180,825 + HP15_p187g173 0.75 +0.2
180,831 - HP15_p187g173 0.75 -0.3
180,946 + HP15_p187g173 0.81 -0.8
181,005 + HP15_p187g173 0.84 +0.6
181,048 + HP15_p187g173 0.86 -0.6
181,070 + HP15_p187g173 0.87 +0.7
181,094 + HP15_p187g173 0.88 +0.1
181,094 + HP15_p187g173 0.88 +0.1
181,145 - -0.3
181,215 + +0.3
181,259 + -0.5
181,283 - -0.1
181,285 + -1.3
181,285 + -0.2
181,285 + +0.3
181,293 - -0.0
181,293 - +0.5
181,343 + +0.4
181,428 - HP15_p187g174 0.13 +2.5
181,465 - HP15_p187g174 0.20 -2.8
181,471 + HP15_p187g174 0.21 +1.1
181,484 + HP15_p187g174 0.23 -0.5
181,501 + HP15_p187g174 0.26 +0.1
181,547 + HP15_p187g174 0.35 -0.4
181,547 + HP15_p187g174 0.35 -0.5
181,555 - HP15_p187g174 0.36 -0.4
181,555 - HP15_p187g174 0.36 -1.0
181,567 + HP15_p187g174 0.38 -2.7
181,570 - HP15_p187g174 0.39 -0.1
181,575 + HP15_p187g174 0.40 +0.7
181,667 + HP15_p187g174 0.57 +0.1
181,685 - HP15_p187g174 0.60 -0.1
181,699 - HP15_p187g174 0.62 -1.9
181,699 - HP15_p187g174 0.62 -0.5
181,717 + HP15_p187g174 0.66 +0.1
181,726 - HP15_p187g174 0.67 -0.2
181,906 - -0.0
181,999 + -1.2
182,007 - -0.2
182,059 + +0.3
182,069 + -0.6
182,069 + +0.7
182,077 - +0.1
182,078 + -0.4
182,078 + +0.1
182,083 + +0.5
182,086 - +0.7
182,088 + +0.2
182,088 + -0.9
182,088 + -0.6
182,091 - +0.2
182,091 - -0.3
182,096 - +0.2
182,096 - +0.1
182,096 - +0.3
182,098 - -0.1
182,100 + +1.1
182,136 + -2.1
182,210 + HP15_p187g175 0.18 -0.9
182,210 + HP15_p187g175 0.18 -3.6
182,251 - HP15_p187g175 0.25 -1.7
182,497 + HP15_p187g175 0.66 -1.2
182,572 + HP15_p187g175 0.79 -0.7
182,578 + HP15_p187g175 0.80 -0.1
182,714 + -2.1
182,722 - -2.4
182,906 + -2.3
182,906 + -1.7

Or see this region's nucleotide sequence