Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g15 and HP15_p187g16 overlap by 1 nucleotides HP15_p187g16 and HP15_p187g17 are separated by 23 nucleotides HP15_p187g17 and HP15_p187g18 are separated by 80 nucleotides HP15_p187g18 and HP15_p187g19 are separated by 509 nucleotides
HP15_p187g15: HP15_p187g15 - serine phosphatase RsbU-like protein, regulator of sigma, at 14,632 to 15,051
_p187g15
HP15_p187g16: HP15_p187g16 - anti-sigma F factor antagonist, at 15,051 to 15,416
_p187g16
HP15_p187g17: HP15_p187g17 - conserved hypothetical protein, at 15,440 to 15,838
_p187g17
HP15_p187g18: HP15_p187g18 - hypothetical protein, at 15,919 to 16,161
_p187g18
HP15_p187g19: HP15_p187g19 - deoxyribodipyrimidine photolyase, at 16,671 to 18,188
_p187g19
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 14.992 kb on + strand, within HP15_p187g15 at 15.002 kb on - strand, within HP15_p187g15 at 15.083 kb on + strand at 15.096 kb on + strand, within HP15_p187g16 at 15.113 kb on - strand, within HP15_p187g16 at 15.140 kb on + strand, within HP15_p187g16 at 15.175 kb on + strand, within HP15_p187g16 at 15.228 kb on + strand, within HP15_p187g16 at 15.266 kb on + strand, within HP15_p187g16 at 15.274 kb on - strand, within HP15_p187g16 at 15.274 kb on - strand, within HP15_p187g16 at 15.336 kb on - strand, within HP15_p187g16 at 15.411 kb on + strand at 15.419 kb on - strand at 15.432 kb on + strand at 15.433 kb on - strand at 15.463 kb on - strand at 15.467 kb on + strand at 15.545 kb on + strand, within HP15_p187g17 at 15.610 kb on - strand, within HP15_p187g17 at 15.610 kb on - strand, within HP15_p187g17 at 15.617 kb on + strand, within HP15_p187g17 at 15.631 kb on - strand, within HP15_p187g17 at 15.639 kb on - strand, within HP15_p187g17 at 15.653 kb on - strand, within HP15_p187g17 at 15.713 kb on + strand, within HP15_p187g17 at 15.713 kb on + strand, within HP15_p187g17 at 15.715 kb on + strand, within HP15_p187g17 at 15.741 kb on - strand, within HP15_p187g17 at 15.882 kb on + strand at 15.961 kb on - strand, within HP15_p187g18 at 15.979 kb on - strand, within HP15_p187g18 at 15.979 kb on - strand, within HP15_p187g18 at 15.981 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.041 kb on + strand, within HP15_p187g18 at 16.041 kb on + strand, within HP15_p187g18 at 16.049 kb on - strand, within HP15_p187g18 at 16.051 kb on + strand, within HP15_p187g18 at 16.081 kb on - strand, within HP15_p187g18 at 16.127 kb on - strand, within HP15_p187g18 at 16.186 kb on - strand at 16.245 kb on + strand at 16.253 kb on - strand at 16.253 kb on - strand at 16.270 kb on + strand at 16.271 kb on + strand at 16.276 kb on + strand at 16.359 kb on + strand at 16.388 kb on + strand at 16.396 kb on - strand at 16.410 kb on - strand at 16.472 kb on - strand at 16.539 kb on - strand at 16.569 kb on - strand at 16.597 kb on + strand at 16.597 kb on + strand at 16.612 kb on + strand at 16.612 kb on + strand at 16.620 kb on - strand at 16.674 kb on - strand at 16.711 kb on + strand at 16.740 kb on - strand at 16.761 kb on + strand at 16.761 kb on + strand at 16.811 kb on - strand at 16.906 kb on + strand, within HP15_p187g19 at 16.909 kb on - strand, within HP15_p187g19 at 16.955 kb on + strand, within HP15_p187g19 at 16.955 kb on + strand, within HP15_p187g19 at 16.963 kb on - strand, within HP15_p187g19 at 16.967 kb on + strand, within HP15_p187g19 at 16.975 kb on - strand, within HP15_p187g19 at 16.978 kb on - strand, within HP15_p187g19 at 16.994 kb on - strand, within HP15_p187g19 at 17.035 kb on + strand, within HP15_p187g19 at 17.035 kb on + strand, within HP15_p187g19 at 17.043 kb on - strand, within HP15_p187g19 at 17.043 kb on - strand, within HP15_p187g19 at 17.064 kb on + strand, within HP15_p187g19 at 17.069 kb on + strand, within HP15_p187g19 at 17.069 kb on + strand at 17.069 kb on + strand, within HP15_p187g19 at 17.077 kb on - strand, within HP15_p187g19 at 17.077 kb on - strand, within HP15_p187g19 at 17.077 kb on - strand, within HP15_p187g19 at 17.078 kb on + strand, within HP15_p187g19 at 17.117 kb on - strand, within HP15_p187g19
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 14,992 + HP15_p187g15 0.86 +1.2 15,002 - HP15_p187g15 0.88 +0.9 15,083 + -2.0 15,096 + HP15_p187g16 0.12 +1.5 15,113 - HP15_p187g16 0.17 -0.9 15,140 + HP15_p187g16 0.24 +0.4 15,175 + HP15_p187g16 0.34 +0.5 15,228 + HP15_p187g16 0.48 +2.9 15,266 + HP15_p187g16 0.59 +0.5 15,274 - HP15_p187g16 0.61 -0.7 15,274 - HP15_p187g16 0.61 -2.4 15,336 - HP15_p187g16 0.78 +1.3 15,411 + +1.6 15,419 - +0.5 15,432 + +0.2 15,433 - +0.4 15,463 - +1.2 15,467 + -0.4 15,545 + HP15_p187g17 0.26 +0.9 15,610 - HP15_p187g17 0.43 +1.1 15,610 - HP15_p187g17 0.43 -1.3 15,617 + HP15_p187g17 0.44 -1.6 15,631 - HP15_p187g17 0.48 +0.6 15,639 - HP15_p187g17 0.50 +0.3 15,653 - HP15_p187g17 0.53 +0.3 15,713 + HP15_p187g17 0.68 +0.1 15,713 + HP15_p187g17 0.68 -0.2 15,715 + HP15_p187g17 0.69 -0.4 15,741 - HP15_p187g17 0.75 -0.1 15,882 + -0.9 15,961 - HP15_p187g18 0.17 -0.3 15,979 - HP15_p187g18 0.25 -1.2 15,979 - HP15_p187g18 0.25 -0.9 15,981 + HP15_p187g18 0.26 -0.1 16,029 + HP15_p187g18 0.45 -2.0 16,029 + HP15_p187g18 0.45 -1.0 16,029 + HP15_p187g18 0.45 -1.7 16,029 + HP15_p187g18 0.45 -1.4 16,029 + HP15_p187g18 0.45 -0.4 16,037 - HP15_p187g18 0.49 -1.4 16,037 - HP15_p187g18 0.49 -0.9 16,037 - HP15_p187g18 0.49 -0.3 16,037 - HP15_p187g18 0.49 +0.5 16,041 + HP15_p187g18 0.50 -1.9 16,041 + HP15_p187g18 0.50 -0.1 16,049 - HP15_p187g18 0.53 -0.4 16,051 + HP15_p187g18 0.54 -1.6 16,081 - HP15_p187g18 0.67 -0.8 16,127 - HP15_p187g18 0.86 -0.4 16,186 - -0.3 16,245 + +0.5 16,253 - -3.4 16,253 - +0.3 16,270 + +0.5 16,271 + +0.9 16,276 + +0.1 16,359 + -0.2 16,388 + +0.5 16,396 - -0.4 16,410 - +0.3 16,472 - -0.4 16,539 - -0.4 16,569 - -0.3 16,597 + -1.0 16,597 + -1.7 16,612 + +0.8 16,612 + +1.2 16,620 - +0.9 16,674 - +0.0 16,711 + -1.0 16,740 - +0.2 16,761 + -0.5 16,761 + +0.6 16,811 - +0.6 16,906 + HP15_p187g19 0.15 -0.2 16,909 - HP15_p187g19 0.16 +0.3 16,955 + HP15_p187g19 0.19 -1.1 16,955 + HP15_p187g19 0.19 +0.9 16,963 - HP15_p187g19 0.19 -0.1 16,967 + HP15_p187g19 0.19 +0.2 16,975 - HP15_p187g19 0.20 +1.2 16,978 - HP15_p187g19 0.20 +1.2 16,994 - HP15_p187g19 0.21 -1.5 17,035 + HP15_p187g19 0.24 -0.3 17,035 + HP15_p187g19 0.24 -0.2 17,043 - HP15_p187g19 0.25 +0.8 17,043 - HP15_p187g19 0.25 -0.5 17,064 + HP15_p187g19 0.26 +0.1 17,069 + HP15_p187g19 0.26 -0.7 17,069 + -0.1 17,069 + HP15_p187g19 0.26 +1.1 17,077 - HP15_p187g19 0.27 +0.3 17,077 - HP15_p187g19 0.27 +0.6 17,077 - HP15_p187g19 0.27 +1.1 17,078 + HP15_p187g19 0.27 +1.0 17,117 - HP15_p187g19 0.29 -0.1
Or see this region's nucleotide sequence