Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g18

Experiment: m.b. Ceftazidime 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g15 and HP15_p187g16 overlap by 1 nucleotidesHP15_p187g16 and HP15_p187g17 are separated by 23 nucleotidesHP15_p187g17 and HP15_p187g18 are separated by 80 nucleotidesHP15_p187g18 and HP15_p187g19 are separated by 509 nucleotides HP15_p187g15: HP15_p187g15 - serine phosphatase RsbU-like protein, regulator of sigma, at 14,632 to 15,051 _p187g15 HP15_p187g16: HP15_p187g16 - anti-sigma F factor antagonist, at 15,051 to 15,416 _p187g16 HP15_p187g17: HP15_p187g17 - conserved hypothetical protein, at 15,440 to 15,838 _p187g17 HP15_p187g18: HP15_p187g18 - hypothetical protein, at 15,919 to 16,161 _p187g18 HP15_p187g19: HP15_p187g19 - deoxyribodipyrimidine photolyase, at 16,671 to 18,188 _p187g19 Position (kb) 15 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 14.992 kb on + strand, within HP15_p187g15at 15.002 kb on - strand, within HP15_p187g15at 15.083 kb on + strandat 15.096 kb on + strand, within HP15_p187g16at 15.113 kb on - strand, within HP15_p187g16at 15.140 kb on + strand, within HP15_p187g16at 15.175 kb on + strand, within HP15_p187g16at 15.228 kb on + strand, within HP15_p187g16at 15.266 kb on + strand, within HP15_p187g16at 15.274 kb on - strand, within HP15_p187g16at 15.274 kb on - strand, within HP15_p187g16at 15.336 kb on - strand, within HP15_p187g16at 15.411 kb on + strandat 15.419 kb on - strandat 15.432 kb on + strandat 15.433 kb on - strandat 15.463 kb on - strandat 15.467 kb on + strandat 15.545 kb on + strand, within HP15_p187g17at 15.610 kb on - strand, within HP15_p187g17at 15.610 kb on - strand, within HP15_p187g17at 15.617 kb on + strand, within HP15_p187g17at 15.631 kb on - strand, within HP15_p187g17at 15.639 kb on - strand, within HP15_p187g17at 15.653 kb on - strand, within HP15_p187g17at 15.713 kb on + strand, within HP15_p187g17at 15.713 kb on + strand, within HP15_p187g17at 15.715 kb on + strand, within HP15_p187g17at 15.741 kb on - strand, within HP15_p187g17at 15.882 kb on + strandat 15.961 kb on - strand, within HP15_p187g18at 15.979 kb on - strand, within HP15_p187g18at 15.979 kb on - strand, within HP15_p187g18at 15.981 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.029 kb on + strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.037 kb on - strand, within HP15_p187g18at 16.041 kb on + strand, within HP15_p187g18at 16.041 kb on + strand, within HP15_p187g18at 16.049 kb on - strand, within HP15_p187g18at 16.051 kb on + strand, within HP15_p187g18at 16.081 kb on - strand, within HP15_p187g18at 16.127 kb on - strand, within HP15_p187g18at 16.186 kb on - strandat 16.245 kb on + strandat 16.253 kb on - strandat 16.253 kb on - strandat 16.270 kb on + strandat 16.271 kb on + strandat 16.276 kb on + strandat 16.359 kb on + strandat 16.388 kb on + strandat 16.396 kb on - strandat 16.410 kb on - strandat 16.472 kb on - strandat 16.539 kb on - strandat 16.569 kb on - strandat 16.597 kb on + strandat 16.597 kb on + strandat 16.612 kb on + strandat 16.612 kb on + strandat 16.620 kb on - strandat 16.674 kb on - strandat 16.711 kb on + strandat 16.740 kb on - strandat 16.761 kb on + strandat 16.761 kb on + strandat 16.811 kb on - strandat 16.906 kb on + strand, within HP15_p187g19at 16.909 kb on - strand, within HP15_p187g19at 16.955 kb on + strand, within HP15_p187g19at 16.955 kb on + strand, within HP15_p187g19at 16.963 kb on - strand, within HP15_p187g19at 16.967 kb on + strand, within HP15_p187g19at 16.975 kb on - strand, within HP15_p187g19at 16.978 kb on - strand, within HP15_p187g19at 16.994 kb on - strand, within HP15_p187g19at 17.035 kb on + strand, within HP15_p187g19at 17.035 kb on + strand, within HP15_p187g19at 17.043 kb on - strand, within HP15_p187g19at 17.043 kb on - strand, within HP15_p187g19at 17.064 kb on + strand, within HP15_p187g19at 17.069 kb on + strand, within HP15_p187g19at 17.069 kb on + strandat 17.069 kb on + strand, within HP15_p187g19at 17.077 kb on - strand, within HP15_p187g19at 17.077 kb on - strand, within HP15_p187g19at 17.077 kb on - strand, within HP15_p187g19at 17.078 kb on + strand, within HP15_p187g19at 17.117 kb on - strand, within HP15_p187g19

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
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14,992 + HP15_p187g15 0.86 +1.2
15,002 - HP15_p187g15 0.88 +0.9
15,083 + -2.0
15,096 + HP15_p187g16 0.12 +1.5
15,113 - HP15_p187g16 0.17 -0.9
15,140 + HP15_p187g16 0.24 +0.4
15,175 + HP15_p187g16 0.34 +0.5
15,228 + HP15_p187g16 0.48 +2.9
15,266 + HP15_p187g16 0.59 +0.5
15,274 - HP15_p187g16 0.61 -0.7
15,274 - HP15_p187g16 0.61 -2.4
15,336 - HP15_p187g16 0.78 +1.3
15,411 + +1.6
15,419 - +0.5
15,432 + +0.2
15,433 - +0.4
15,463 - +1.2
15,467 + -0.4
15,545 + HP15_p187g17 0.26 +0.9
15,610 - HP15_p187g17 0.43 +1.1
15,610 - HP15_p187g17 0.43 -1.3
15,617 + HP15_p187g17 0.44 -1.6
15,631 - HP15_p187g17 0.48 +0.6
15,639 - HP15_p187g17 0.50 +0.3
15,653 - HP15_p187g17 0.53 +0.3
15,713 + HP15_p187g17 0.68 +0.1
15,713 + HP15_p187g17 0.68 -0.2
15,715 + HP15_p187g17 0.69 -0.4
15,741 - HP15_p187g17 0.75 -0.1
15,882 + -0.9
15,961 - HP15_p187g18 0.17 -0.3
15,979 - HP15_p187g18 0.25 -1.2
15,979 - HP15_p187g18 0.25 -0.9
15,981 + HP15_p187g18 0.26 -0.1
16,029 + HP15_p187g18 0.45 -2.0
16,029 + HP15_p187g18 0.45 -1.0
16,029 + HP15_p187g18 0.45 -1.7
16,029 + HP15_p187g18 0.45 -1.4
16,029 + HP15_p187g18 0.45 -0.4
16,037 - HP15_p187g18 0.49 -1.4
16,037 - HP15_p187g18 0.49 -0.9
16,037 - HP15_p187g18 0.49 -0.3
16,037 - HP15_p187g18 0.49 +0.5
16,041 + HP15_p187g18 0.50 -1.9
16,041 + HP15_p187g18 0.50 -0.1
16,049 - HP15_p187g18 0.53 -0.4
16,051 + HP15_p187g18 0.54 -1.6
16,081 - HP15_p187g18 0.67 -0.8
16,127 - HP15_p187g18 0.86 -0.4
16,186 - -0.3
16,245 + +0.5
16,253 - -3.4
16,253 - +0.3
16,270 + +0.5
16,271 + +0.9
16,276 + +0.1
16,359 + -0.2
16,388 + +0.5
16,396 - -0.4
16,410 - +0.3
16,472 - -0.4
16,539 - -0.4
16,569 - -0.3
16,597 + -1.0
16,597 + -1.7
16,612 + +0.8
16,612 + +1.2
16,620 - +0.9
16,674 - +0.0
16,711 + -1.0
16,740 - +0.2
16,761 + -0.5
16,761 + +0.6
16,811 - +0.6
16,906 + HP15_p187g19 0.15 -0.2
16,909 - HP15_p187g19 0.16 +0.3
16,955 + HP15_p187g19 0.19 -1.1
16,955 + HP15_p187g19 0.19 +0.9
16,963 - HP15_p187g19 0.19 -0.1
16,967 + HP15_p187g19 0.19 +0.2
16,975 - HP15_p187g19 0.20 +1.2
16,978 - HP15_p187g19 0.20 +1.2
16,994 - HP15_p187g19 0.21 -1.5
17,035 + HP15_p187g19 0.24 -0.3
17,035 + HP15_p187g19 0.24 -0.2
17,043 - HP15_p187g19 0.25 +0.8
17,043 - HP15_p187g19 0.25 -0.5
17,064 + HP15_p187g19 0.26 +0.1
17,069 + HP15_p187g19 0.26 -0.7
17,069 + -0.1
17,069 + HP15_p187g19 0.26 +1.1
17,077 - HP15_p187g19 0.27 +0.3
17,077 - HP15_p187g19 0.27 +0.6
17,077 - HP15_p187g19 0.27 +1.1
17,078 + HP15_p187g19 0.27 +1.0
17,117 - HP15_p187g19 0.29 -0.1

Or see this region's nucleotide sequence