Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g15 and HP15_p42g16 are separated by 41 nucleotides HP15_p42g16 and HP15_p42g17 are separated by 21 nucleotides
HP15_p42g15: HP15_p42g15 - KfrA protein, at 9,615 to 10,646
_p42g15
HP15_p42g16: HP15_p42g16 - conjugal transfer protein TraO, at 10,688 to 11,152
_p42g16
HP15_p42g17: HP15_p42g17 - traN-like protein, at 11,174 to 12,502
_p42g17
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1 at 9.695 kb on + strand at 9.702 kb on + strand at 9.702 kb on + strand at 9.702 kb on + strand at 9.710 kb on - strand at 9.710 kb on - strand at 9.710 kb on - strand at 9.731 kb on - strand, within HP15_p42g15 at 9.758 kb on + strand, within HP15_p42g15 at 9.780 kb on - strand, within HP15_p42g15 at 9.827 kb on + strand, within HP15_p42g15 at 9.828 kb on - strand, within HP15_p42g15 at 9.852 kb on + strand, within HP15_p42g15 at 9.903 kb on - strand, within HP15_p42g15 at 10.014 kb on + strand, within HP15_p42g15 at 10.043 kb on + strand, within HP15_p42g15 at 10.066 kb on - strand, within HP15_p42g15 at 10.145 kb on - strand, within HP15_p42g15 at 10.189 kb on + strand, within HP15_p42g15 at 10.199 kb on - strand, within HP15_p42g15 at 10.244 kb on + strand, within HP15_p42g15 at 10.253 kb on - strand, within HP15_p42g15 at 10.298 kb on + strand, within HP15_p42g15 at 10.412 kb on + strand, within HP15_p42g15 at 10.412 kb on + strand, within HP15_p42g15 at 10.548 kb on + strand at 10.585 kb on + strand at 10.633 kb on - strand at 10.710 kb on + strand at 10.789 kb on + strand, within HP15_p42g16 at 10.789 kb on + strand, within HP15_p42g16 at 10.856 kb on + strand, within HP15_p42g16 at 10.864 kb on - strand, within HP15_p42g16 at 10.990 kb on + strand, within HP15_p42g16 at 11.106 kb on + strand at 11.106 kb on - strand at 11.188 kb on + strand at 11.283 kb on - strand at 11.363 kb on - strand, within HP15_p42g17 at 11.384 kb on + strand, within HP15_p42g17 at 11.384 kb on + strand, within HP15_p42g17 at 11.472 kb on + strand, within HP15_p42g17 at 11.480 kb on - strand, within HP15_p42g17 at 11.490 kb on + strand, within HP15_p42g17 at 11.503 kb on - strand, within HP15_p42g17 at 11.534 kb on + strand, within HP15_p42g17 at 11.537 kb on - strand, within HP15_p42g17 at 11.571 kb on + strand, within HP15_p42g17 at 11.689 kb on - strand, within HP15_p42g17 at 11.722 kb on + strand, within HP15_p42g17 at 11.966 kb on + strand, within HP15_p42g17 at 11.982 kb on + strand, within HP15_p42g17 at 11.990 kb on - strand, within HP15_p42g17 at 12.022 kb on + strand, within HP15_p42g17 at 12.050 kb on - strand, within HP15_p42g17 at 12.146 kb on - strand, within HP15_p42g17
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 9,695 + -0.7 9,702 + +0.2 9,702 + -0.3 9,702 + -0.4 9,710 - -0.0 9,710 - -0.8 9,710 - -1.2 9,731 - HP15_p42g15 0.11 -0.6 9,758 + HP15_p42g15 0.14 -0.1 9,780 - HP15_p42g15 0.16 -0.1 9,827 + HP15_p42g15 0.21 -1.6 9,828 - HP15_p42g15 0.21 -0.5 9,852 + HP15_p42g15 0.23 +0.2 9,903 - HP15_p42g15 0.28 -0.4 10,014 + HP15_p42g15 0.39 +0.8 10,043 + HP15_p42g15 0.41 -0.2 10,066 - HP15_p42g15 0.44 +0.3 10,145 - HP15_p42g15 0.51 -0.2 10,189 + HP15_p42g15 0.56 -0.5 10,199 - HP15_p42g15 0.57 +0.4 10,244 + HP15_p42g15 0.61 -0.0 10,253 - HP15_p42g15 0.62 -0.5 10,298 + HP15_p42g15 0.66 -0.1 10,412 + HP15_p42g15 0.77 -0.4 10,412 + HP15_p42g15 0.77 -0.4 10,548 + +0.6 10,585 + +0.3 10,633 - -0.1 10,710 + -1.1 10,789 + HP15_p42g16 0.22 -1.6 10,789 + HP15_p42g16 0.22 -0.3 10,856 + HP15_p42g16 0.36 -1.2 10,864 - HP15_p42g16 0.38 -1.5 10,990 + HP15_p42g16 0.65 -1.2 11,106 + +0.0 11,106 - -1.5 11,188 + -0.3 11,283 - -0.4 11,363 - HP15_p42g17 0.14 -2.1 11,384 + HP15_p42g17 0.16 +0.2 11,384 + HP15_p42g17 0.16 -0.2 11,472 + HP15_p42g17 0.22 -0.5 11,480 - HP15_p42g17 0.23 -1.0 11,490 + HP15_p42g17 0.24 -1.1 11,503 - HP15_p42g17 0.25 +0.4 11,534 + HP15_p42g17 0.27 -0.6 11,537 - HP15_p42g17 0.27 +0.2 11,571 + HP15_p42g17 0.30 -0.1 11,689 - HP15_p42g17 0.39 -0.4 11,722 + HP15_p42g17 0.41 -0.2 11,966 + HP15_p42g17 0.60 +0.0 11,982 + HP15_p42g17 0.61 -0.6 11,990 - HP15_p42g17 0.61 -0.3 12,022 + HP15_p42g17 0.64 +0.3 12,050 - HP15_p42g17 0.66 +0.1 12,146 - HP15_p42g17 0.73 -1.6
Or see this region's nucleotide sequence