Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g4 and HP15_p42g5 are separated by 439 nucleotides HP15_p42g5 and HP15_p42g6 are separated by 121 nucleotides HP15_p42g6 and HP15_p42g7 are separated by 40 nucleotides
HP15_p42g4: HP15_p42g4 - hypothetical protein, at 3,414 to 3,533
_p42g4
HP15_p42g5: HP15_p42g5 - conserved hypothetical protein, at 3,973 to 4,269
_p42g5
HP15_p42g6: HP15_p42g6 - antirestriction protein, at 4,391 to 4,825
_p42g6
HP15_p42g7: HP15_p42g7 - klcB-like protein, at 4,866 to 5,933
_p42g7
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.423 kb on + strand at 3.494 kb on + strand, within HP15_p42g4 at 3.502 kb on - strand, within HP15_p42g4 at 3.527 kb on + strand at 3.535 kb on - strand at 3.560 kb on + strand at 3.631 kb on + strand at 3.631 kb on + strand at 3.636 kb on + strand at 3.640 kb on + strand at 3.641 kb on + strand at 3.649 kb on - strand at 3.656 kb on + strand at 3.664 kb on - strand at 3.666 kb on - strand at 3.725 kb on - strand at 3.736 kb on + strand at 3.753 kb on + strand at 3.753 kb on + strand at 3.758 kb on + strand at 3.786 kb on + strand at 3.796 kb on + strand at 3.811 kb on - strand at 3.834 kb on + strand at 3.842 kb on - strand at 3.843 kb on - strand at 3.926 kb on + strand at 4.058 kb on + strand, within HP15_p42g5 at 4.071 kb on + strand, within HP15_p42g5 at 4.079 kb on - strand, within HP15_p42g5 at 4.082 kb on + strand, within HP15_p42g5 at 4.114 kb on + strand, within HP15_p42g5 at 4.114 kb on + strand, within HP15_p42g5 at 4.122 kb on - strand, within HP15_p42g5 at 4.158 kb on + strand, within HP15_p42g5 at 4.166 kb on + strand, within HP15_p42g5 at 4.368 kb on + strand at 4.439 kb on + strand, within HP15_p42g6 at 4.497 kb on + strand, within HP15_p42g6 at 4.521 kb on - strand, within HP15_p42g6 at 4.540 kb on + strand, within HP15_p42g6 at 4.561 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.563 kb on + strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.569 kb on - strand, within HP15_p42g6 at 4.571 kb on - strand, within HP15_p42g6 at 4.571 kb on - strand, within HP15_p42g6 at 4.713 kb on - strand, within HP15_p42g6 at 4.718 kb on + strand, within HP15_p42g6 at 4.720 kb on - strand, within HP15_p42g6 at 4.723 kb on + strand, within HP15_p42g6 at 4.723 kb on + strand, within HP15_p42g6 at 4.726 kb on - strand, within HP15_p42g6 at 4.726 kb on - strand, within HP15_p42g6 at 4.772 kb on + strand, within HP15_p42g6 at 4.779 kb on + strand, within HP15_p42g6 at 4.779 kb on + strand, within HP15_p42g6 at 4.972 kb on + strand at 4.972 kb on + strand at 4.972 kb on + strand at 4.977 kb on + strand, within HP15_p42g7 at 4.980 kb on - strand, within HP15_p42g7 at 5.245 kb on + strand, within HP15_p42g7 at 5.322 kb on + strand, within HP15_p42g7 at 5.330 kb on - strand, within HP15_p42g7 at 5.330 kb on - strand, within HP15_p42g7 at 5.386 kb on - strand, within HP15_p42g7 at 5.464 kb on - strand, within HP15_p42g7 at 5.477 kb on - strand, within HP15_p42g7 at 5.478 kb on - strand, within HP15_p42g7 at 5.478 kb on - strand, within HP15_p42g7 at 5.495 kb on - strand, within HP15_p42g7 at 5.496 kb on + strand, within HP15_p42g7 at 5.516 kb on - strand, within HP15_p42g7 at 5.641 kb on - strand, within HP15_p42g7 at 5.641 kb on - strand, within HP15_p42g7 at 5.675 kb on + strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.683 kb on - strand, within HP15_p42g7 at 5.732 kb on + strand, within HP15_p42g7 at 5.740 kb on - strand, within HP15_p42g7 at 5.768 kb on + strand, within HP15_p42g7 at 5.776 kb on + strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.784 kb on - strand, within HP15_p42g7 at 5.805 kb on - strand, within HP15_p42g7
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,423 + -0.2 3,494 + HP15_p42g4 0.67 -0.1 3,502 - HP15_p42g4 0.73 +0.2 3,527 + +1.0 3,535 - +0.7 3,560 + -0.9 3,631 + -0.1 3,631 + -0.2 3,636 + +0.9 3,640 + +0.0 3,641 + -0.7 3,649 - -0.2 3,656 + -0.1 3,664 - -0.2 3,666 - -0.0 3,725 - +0.5 3,736 + +0.8 3,753 + -0.5 3,753 + +0.6 3,758 + +0.3 3,786 + -1.1 3,796 + -0.6 3,811 - +0.4 3,834 + -0.3 3,842 - +0.2 3,843 - -0.5 3,926 + -0.6 4,058 + HP15_p42g5 0.29 -0.3 4,071 + HP15_p42g5 0.33 -0.8 4,079 - HP15_p42g5 0.36 -0.1 4,082 + HP15_p42g5 0.37 -0.4 4,114 + HP15_p42g5 0.47 -1.0 4,114 + HP15_p42g5 0.47 +0.8 4,122 - HP15_p42g5 0.50 -0.1 4,158 + HP15_p42g5 0.62 -0.8 4,166 + HP15_p42g5 0.65 -0.1 4,368 + -0.4 4,439 + HP15_p42g6 0.11 -1.5 4,497 + HP15_p42g6 0.24 -0.5 4,521 - HP15_p42g6 0.30 +0.1 4,540 + HP15_p42g6 0.34 +0.2 4,561 + HP15_p42g6 0.39 -0.4 4,563 + HP15_p42g6 0.40 +0.5 4,563 + HP15_p42g6 0.40 -0.8 4,563 + HP15_p42g6 0.40 +1.6 4,569 - HP15_p42g6 0.41 -1.0 4,569 - HP15_p42g6 0.41 -0.3 4,569 - HP15_p42g6 0.41 -0.1 4,569 - HP15_p42g6 0.41 +1.2 4,571 - HP15_p42g6 0.41 -0.7 4,571 - HP15_p42g6 0.41 +3.1 4,713 - HP15_p42g6 0.74 -0.1 4,718 + HP15_p42g6 0.75 -1.5 4,720 - HP15_p42g6 0.76 -0.6 4,723 + HP15_p42g6 0.76 -0.5 4,723 + HP15_p42g6 0.76 -2.2 4,726 - HP15_p42g6 0.77 -0.3 4,726 - HP15_p42g6 0.77 -0.9 4,772 + HP15_p42g6 0.88 -2.4 4,779 + HP15_p42g6 0.89 -0.1 4,779 + HP15_p42g6 0.89 -3.4 4,972 + -0.6 4,972 + -0.4 4,972 + -1.3 4,977 + HP15_p42g7 0.10 -1.4 4,980 - HP15_p42g7 0.11 -0.7 5,245 + HP15_p42g7 0.35 -0.9 5,322 + HP15_p42g7 0.43 -0.7 5,330 - HP15_p42g7 0.43 +0.6 5,330 - HP15_p42g7 0.43 +0.0 5,386 - HP15_p42g7 0.49 -0.1 5,464 - HP15_p42g7 0.56 -0.2 5,477 - HP15_p42g7 0.57 +0.1 5,478 - HP15_p42g7 0.57 -0.3 5,478 - HP15_p42g7 0.57 +0.3 5,495 - HP15_p42g7 0.59 -0.1 5,496 + HP15_p42g7 0.59 -1.7 5,516 - HP15_p42g7 0.61 +0.1 5,641 - HP15_p42g7 0.73 +1.5 5,641 - HP15_p42g7 0.73 +0.4 5,675 + HP15_p42g7 0.76 -2.2 5,683 - HP15_p42g7 0.76 -0.4 5,683 - HP15_p42g7 0.76 +0.5 5,683 - HP15_p42g7 0.76 +1.1 5,683 - HP15_p42g7 0.76 -0.3 5,683 - HP15_p42g7 0.76 -0.2 5,683 - HP15_p42g7 0.76 -0.0 5,683 - HP15_p42g7 0.76 -0.1 5,683 - HP15_p42g7 0.76 +0.1 5,732 + HP15_p42g7 0.81 -1.6 5,740 - HP15_p42g7 0.82 -0.6 5,768 + HP15_p42g7 0.84 -2.7 5,776 + HP15_p42g7 0.85 -2.6 5,784 - HP15_p42g7 0.86 +0.8 5,784 - HP15_p42g7 0.86 +1.1 5,805 - HP15_p42g7 0.88 -0.8
Or see this region's nucleotide sequence