Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4169 and HP15_4170 are separated by 13 nucleotides HP15_4170 and HP15_4171 are separated by 85 nucleotides
HP15_4169: HP15_4169 - diguanylate cyclase (GGDEF domain), at 4,405,832 to 4,406,788
_4169
HP15_4170: HP15_4170 - protein containing chemotaxis methyl-accepting receptor, signaling domain, at 4,406,802 to 4,407,071
_4170
HP15_4171: HP15_4171 - transcriptional regulator of molybdate metabolism, LysR family, at 4,407,157 to 4,408,338
_4171
Position (kb)
4406
4407
4408 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4405.829 kb on + strand at 4405.854 kb on + strand at 4405.862 kb on - strand at 4405.862 kb on - strand at 4406.027 kb on + strand, within HP15_4169 at 4406.035 kb on - strand, within HP15_4169 at 4406.074 kb on - strand, within HP15_4169 at 4406.144 kb on + strand, within HP15_4169 at 4406.144 kb on + strand, within HP15_4169 at 4406.191 kb on + strand, within HP15_4169 at 4406.210 kb on + strand, within HP15_4169 at 4406.218 kb on - strand, within HP15_4169 at 4406.248 kb on + strand, within HP15_4169 at 4406.256 kb on - strand, within HP15_4169 at 4406.256 kb on - strand, within HP15_4169 at 4406.404 kb on + strand, within HP15_4169 at 4406.422 kb on - strand, within HP15_4169 at 4406.432 kb on - strand, within HP15_4169 at 4406.451 kb on + strand, within HP15_4169 at 4406.452 kb on - strand, within HP15_4169 at 4406.461 kb on - strand, within HP15_4169 at 4406.480 kb on + strand, within HP15_4169 at 4406.480 kb on + strand, within HP15_4169 at 4406.492 kb on + strand, within HP15_4169 at 4406.499 kb on + strand, within HP15_4169 at 4406.499 kb on + strand, within HP15_4169 at 4406.592 kb on + strand, within HP15_4169 at 4406.600 kb on - strand, within HP15_4169 at 4406.608 kb on + strand, within HP15_4169 at 4406.613 kb on + strand, within HP15_4169 at 4406.615 kb on + strand, within HP15_4169 at 4406.616 kb on - strand, within HP15_4169 at 4406.654 kb on - strand, within HP15_4169 at 4406.761 kb on - strand at 4406.845 kb on + strand, within HP15_4170 at 4406.853 kb on - strand, within HP15_4170 at 4406.972 kb on - strand, within HP15_4170 at 4407.032 kb on + strand, within HP15_4170 at 4407.040 kb on - strand, within HP15_4170 at 4407.131 kb on - strand at 4407.165 kb on + strand at 4407.190 kb on - strand at 4407.200 kb on + strand at 4407.210 kb on + strand at 4407.253 kb on - strand at 4407.291 kb on + strand, within HP15_4171 at 4407.299 kb on - strand, within HP15_4171 at 4407.299 kb on - strand, within HP15_4171 at 4407.449 kb on - strand, within HP15_4171 at 4407.508 kb on - strand, within HP15_4171 at 4407.509 kb on - strand, within HP15_4171 at 4407.525 kb on + strand, within HP15_4171 at 4407.543 kb on - strand, within HP15_4171 at 4407.584 kb on + strand, within HP15_4171 at 4407.595 kb on + strand, within HP15_4171 at 4407.603 kb on + strand, within HP15_4171 at 4407.611 kb on - strand, within HP15_4171 at 4407.612 kb on + strand, within HP15_4171 at 4407.620 kb on - strand, within HP15_4171 at 4407.701 kb on + strand, within HP15_4171 at 4407.806 kb on + strand, within HP15_4171 at 4407.874 kb on - strand, within HP15_4171 at 4407.879 kb on - strand, within HP15_4171 at 4407.973 kb on - strand, within HP15_4171 at 4408.043 kb on - strand, within HP15_4171 at 4408.055 kb on + strand, within HP15_4171
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 4,405,829 + -1.0 4,405,854 + -0.0 4,405,862 - +0.8 4,405,862 - -0.0 4,406,027 + HP15_4169 0.20 -0.3 4,406,035 - HP15_4169 0.21 -0.3 4,406,074 - HP15_4169 0.25 +3.3 4,406,144 + HP15_4169 0.33 -1.4 4,406,144 + HP15_4169 0.33 +0.5 4,406,191 + HP15_4169 0.38 -2.0 4,406,210 + HP15_4169 0.39 -0.4 4,406,218 - HP15_4169 0.40 -0.4 4,406,248 + HP15_4169 0.43 +0.0 4,406,256 - HP15_4169 0.44 +1.7 4,406,256 - HP15_4169 0.44 -0.0 4,406,404 + HP15_4169 0.60 +0.3 4,406,422 - HP15_4169 0.62 -0.1 4,406,432 - HP15_4169 0.63 -1.4 4,406,451 + HP15_4169 0.65 +1.0 4,406,452 - HP15_4169 0.65 +0.3 4,406,461 - HP15_4169 0.66 +0.1 4,406,480 + HP15_4169 0.68 +1.1 4,406,480 + HP15_4169 0.68 +0.1 4,406,492 + HP15_4169 0.69 +1.0 4,406,499 + HP15_4169 0.70 -1.5 4,406,499 + HP15_4169 0.70 -0.1 4,406,592 + HP15_4169 0.79 +0.1 4,406,600 - HP15_4169 0.80 +0.3 4,406,608 + HP15_4169 0.81 -0.1 4,406,613 + HP15_4169 0.82 +3.9 4,406,615 + HP15_4169 0.82 -0.7 4,406,616 - HP15_4169 0.82 +0.3 4,406,654 - HP15_4169 0.86 +0.9 4,406,761 - -0.4 4,406,845 + HP15_4170 0.16 -0.5 4,406,853 - HP15_4170 0.19 +0.3 4,406,972 - HP15_4170 0.63 -1.2 4,407,032 + HP15_4170 0.85 -1.1 4,407,040 - HP15_4170 0.88 +0.0 4,407,131 - +0.2 4,407,165 + -0.0 4,407,190 - -0.9 4,407,200 + +1.9 4,407,210 + -0.7 4,407,253 - +1.3 4,407,291 + HP15_4171 0.11 -1.0 4,407,299 - HP15_4171 0.12 -1.2 4,407,299 - HP15_4171 0.12 +0.3 4,407,449 - HP15_4171 0.25 +2.3 4,407,508 - HP15_4171 0.30 +0.2 4,407,509 - HP15_4171 0.30 -0.2 4,407,525 + HP15_4171 0.31 +0.3 4,407,543 - HP15_4171 0.33 -0.1 4,407,584 + HP15_4171 0.36 +0.5 4,407,595 + HP15_4171 0.37 -0.3 4,407,603 + HP15_4171 0.38 -0.2 4,407,611 - HP15_4171 0.38 +0.6 4,407,612 + HP15_4171 0.38 +0.4 4,407,620 - HP15_4171 0.39 +0.3 4,407,701 + HP15_4171 0.46 +2.0 4,407,806 + HP15_4171 0.55 -0.1 4,407,874 - HP15_4171 0.61 +0.2 4,407,879 - HP15_4171 0.61 +1.4 4,407,973 - HP15_4171 0.69 -0.3 4,408,043 - HP15_4171 0.75 +1.0 4,408,055 + HP15_4171 0.76 +0.3
Or see this region's nucleotide sequence