Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3898 and HP15_3899 are separated by 148 nucleotides HP15_3899 and HP15_3900 overlap by 4 nucleotides HP15_3900 and HP15_3901 are separated by 7 nucleotides
HP15_3898: HP15_3898 - conserved hypothetical protein, secreted, at 4,128,206 to 4,129,690
_3898
HP15_3899: HP15_3899 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,129,839 to 4,130,402
_3899
HP15_3900: HP15_3900 - conserved hypothetical protein, at 4,130,399 to 4,131,100
_3900
HP15_3901: HP15_3901 - signal transduction protein, at 4,131,108 to 4,132,529
_3901
Position (kb) 4130
4131
4132 Strain fitness (log2 ratio) -1
0
1
2 at 4129.546 kb on - strand at 4129.594 kb on - strand at 4129.640 kb on + strand at 4129.661 kb on - strand at 4129.750 kb on - strand at 4129.841 kb on + strand at 4129.926 kb on - strand, within HP15_3899 at 4129.954 kb on + strand, within HP15_3899 at 4129.962 kb on - strand, within HP15_3899 at 4130.070 kb on + strand, within HP15_3899 at 4130.075 kb on + strand, within HP15_3899 at 4130.183 kb on + strand, within HP15_3899 at 4130.188 kb on + strand, within HP15_3899 at 4130.191 kb on - strand, within HP15_3899 at 4130.191 kb on - strand, within HP15_3899 at 4130.212 kb on + strand, within HP15_3899 at 4130.221 kb on + strand, within HP15_3899 at 4130.292 kb on - strand, within HP15_3899 at 4130.376 kb on - strand at 4130.397 kb on - strand at 4130.619 kb on + strand, within HP15_3900 at 4130.650 kb on - strand, within HP15_3900 at 4130.668 kb on + strand, within HP15_3900 at 4130.668 kb on + strand, within HP15_3900 at 4130.676 kb on - strand, within HP15_3900 at 4130.700 kb on - strand, within HP15_3900 at 4130.794 kb on - strand, within HP15_3900 at 4130.979 kb on - strand, within HP15_3900 at 4130.989 kb on - strand, within HP15_3900 at 4130.998 kb on - strand, within HP15_3900 at 4131.110 kb on + strand at 4131.120 kb on + strand at 4131.120 kb on + strand at 4131.143 kb on - strand at 4131.176 kb on + strand at 4131.191 kb on + strand at 4131.196 kb on + strand at 4131.214 kb on + strand at 4131.222 kb on - strand at 4131.222 kb on - strand at 4131.328 kb on + strand, within HP15_3901 at 4131.395 kb on + strand, within HP15_3901 at 4131.463 kb on + strand, within HP15_3901 at 4131.473 kb on + strand, within HP15_3901 at 4131.509 kb on - strand, within HP15_3901 at 4131.697 kb on + strand, within HP15_3901 at 4131.704 kb on + strand, within HP15_3901 at 4131.726 kb on - strand, within HP15_3901 at 4131.782 kb on - strand, within HP15_3901 at 4131.802 kb on + strand, within HP15_3901 at 4131.802 kb on + strand, within HP15_3901 at 4131.810 kb on - strand, within HP15_3901 at 4131.812 kb on + strand, within HP15_3901 at 4131.860 kb on - strand, within HP15_3901 at 4131.923 kb on + strand, within HP15_3901 at 4131.965 kb on - strand, within HP15_3901 at 4132.036 kb on - strand, within HP15_3901
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 4,129,546 - +0.8 4,129,594 - -0.2 4,129,640 + -0.4 4,129,661 - -0.7 4,129,750 - +0.4 4,129,841 + -0.1 4,129,926 - HP15_3899 0.15 -0.4 4,129,954 + HP15_3899 0.20 +1.0 4,129,962 - HP15_3899 0.22 -0.7 4,130,070 + HP15_3899 0.41 -0.5 4,130,075 + HP15_3899 0.42 +0.7 4,130,183 + HP15_3899 0.61 +0.8 4,130,188 + HP15_3899 0.62 -0.0 4,130,191 - HP15_3899 0.62 -0.8 4,130,191 - HP15_3899 0.62 +0.3 4,130,212 + HP15_3899 0.66 +0.4 4,130,221 + HP15_3899 0.68 -0.9 4,130,292 - HP15_3899 0.80 +0.9 4,130,376 - -0.6 4,130,397 - +0.5 4,130,619 + HP15_3900 0.31 -0.8 4,130,650 - HP15_3900 0.36 -0.0 4,130,668 + HP15_3900 0.38 +0.3 4,130,668 + HP15_3900 0.38 +1.3 4,130,676 - HP15_3900 0.39 +0.1 4,130,700 - HP15_3900 0.43 -0.6 4,130,794 - HP15_3900 0.56 -0.7 4,130,979 - HP15_3900 0.83 -0.6 4,130,989 - HP15_3900 0.84 -0.6 4,130,998 - HP15_3900 0.85 -0.6 4,131,110 + +2.6 4,131,120 + +1.5 4,131,120 + -0.7 4,131,143 - -1.7 4,131,176 + +0.5 4,131,191 + -0.1 4,131,196 + -0.0 4,131,214 + -0.5 4,131,222 - +0.6 4,131,222 - +0.2 4,131,328 + HP15_3901 0.15 +0.7 4,131,395 + HP15_3901 0.20 -0.1 4,131,463 + HP15_3901 0.25 +0.1 4,131,473 + HP15_3901 0.26 +0.1 4,131,509 - HP15_3901 0.28 +0.0 4,131,697 + HP15_3901 0.41 -0.2 4,131,704 + HP15_3901 0.42 +0.7 4,131,726 - HP15_3901 0.43 +1.3 4,131,782 - HP15_3901 0.47 +1.3 4,131,802 + HP15_3901 0.49 -0.2 4,131,802 + HP15_3901 0.49 +1.2 4,131,810 - HP15_3901 0.49 +0.5 4,131,812 + HP15_3901 0.50 +1.3 4,131,860 - HP15_3901 0.53 +0.0 4,131,923 + HP15_3901 0.57 +0.3 4,131,965 - HP15_3901 0.60 +0.1 4,132,036 - HP15_3901 0.65 -1.5
Or see this region's nucleotide sequence