Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3886 and HP15_3887 overlap by 1 nucleotides HP15_3887 and HP15_3888 overlap by 4 nucleotides HP15_3888 and HP15_3889 are separated by 67 nucleotides
HP15_3886: HP15_3886 - energy transducer TonB, C-terminal region, at 4,116,607 to 4,117,347
_3886
HP15_3887: HP15_3887 - biopolymer transport protein ExbD/TolR, at 4,117,347 to 4,117,754
_3887
HP15_3888: HP15_3888 - ferric siderophore transport system inner membrane protein E, at 4,117,751 to 4,118,065
_3888
HP15_3889: HP15_3889 - MotA/TolQ/ExbB proton channel, at 4,118,133 to 4,118,921
_3889
Position (kb) 4117
4118
4119 Strain fitness (log2 ratio) -1
0
1
2 at 4116.822 kb on + strand, within HP15_3886 at 4116.899 kb on - strand, within HP15_3886 at 4116.899 kb on - strand, within HP15_3886 at 4116.947 kb on - strand, within HP15_3886 at 4116.994 kb on - strand, within HP15_3886 at 4117.046 kb on + strand, within HP15_3886 at 4117.054 kb on - strand, within HP15_3886 at 4117.060 kb on + strand, within HP15_3886 at 4117.076 kb on + strand, within HP15_3886 at 4117.190 kb on + strand, within HP15_3886 at 4117.217 kb on - strand, within HP15_3886 at 4117.221 kb on + strand, within HP15_3886 at 4117.238 kb on + strand, within HP15_3886 at 4117.246 kb on - strand, within HP15_3886 at 4117.246 kb on - strand, within HP15_3886 at 4117.257 kb on + strand, within HP15_3886 at 4117.344 kb on + strand at 4117.401 kb on + strand, within HP15_3887 at 4117.560 kb on - strand, within HP15_3887 at 4117.707 kb on + strand, within HP15_3887 at 4117.725 kb on + strand at 4117.733 kb on - strand at 4117.772 kb on - strand at 4117.893 kb on - strand, within HP15_3888 at 4118.053 kb on + strand at 4118.063 kb on + strand at 4118.072 kb on + strand at 4118.102 kb on - strand at 4118.125 kb on + strand at 4118.168 kb on - strand at 4118.391 kb on + strand, within HP15_3889 at 4118.399 kb on - strand, within HP15_3889 at 4118.413 kb on + strand, within HP15_3889 at 4118.439 kb on + strand, within HP15_3889 at 4118.491 kb on - strand, within HP15_3889 at 4118.496 kb on - strand, within HP15_3889 at 4118.496 kb on - strand, within HP15_3889 at 4118.538 kb on + strand, within HP15_3889 at 4118.544 kb on - strand, within HP15_3889 at 4118.546 kb on - strand, within HP15_3889 at 4118.571 kb on - strand, within HP15_3889 at 4118.627 kb on - strand, within HP15_3889 at 4118.694 kb on - strand, within HP15_3889 at 4118.784 kb on - strand, within HP15_3889 at 4118.893 kb on + strand at 4118.895 kb on + strand at 4118.895 kb on + strand at 4118.900 kb on + strand at 4118.906 kb on + strand at 4118.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 4,116,822 + HP15_3886 0.29 +0.2 4,116,899 - HP15_3886 0.39 +0.0 4,116,899 - HP15_3886 0.39 -0.1 4,116,947 - HP15_3886 0.46 -0.1 4,116,994 - HP15_3886 0.52 +1.3 4,117,046 + HP15_3886 0.59 +0.5 4,117,054 - HP15_3886 0.60 +0.0 4,117,060 + HP15_3886 0.61 +0.2 4,117,076 + HP15_3886 0.63 -0.9 4,117,190 + HP15_3886 0.79 +0.8 4,117,217 - HP15_3886 0.82 +0.4 4,117,221 + HP15_3886 0.83 +1.5 4,117,238 + HP15_3886 0.85 -1.3 4,117,246 - HP15_3886 0.86 -0.4 4,117,246 - HP15_3886 0.86 +0.9 4,117,257 + HP15_3886 0.88 +0.1 4,117,344 + +0.4 4,117,401 + HP15_3887 0.13 -0.2 4,117,560 - HP15_3887 0.52 +1.5 4,117,707 + HP15_3887 0.88 +0.7 4,117,725 + -1.5 4,117,733 - +1.6 4,117,772 - +1.1 4,117,893 - HP15_3888 0.45 -0.9 4,118,053 + -0.8 4,118,063 + +1.4 4,118,072 + -0.1 4,118,102 - +2.6 4,118,125 + +0.7 4,118,168 - +0.7 4,118,391 + HP15_3889 0.33 +0.4 4,118,399 - HP15_3889 0.34 +0.8 4,118,413 + HP15_3889 0.35 -1.2 4,118,439 + HP15_3889 0.39 -1.1 4,118,491 - HP15_3889 0.45 -0.1 4,118,496 - HP15_3889 0.46 -0.1 4,118,496 - HP15_3889 0.46 +0.8 4,118,538 + HP15_3889 0.51 -0.1 4,118,544 - HP15_3889 0.52 -0.2 4,118,546 - HP15_3889 0.52 -0.5 4,118,571 - HP15_3889 0.56 -0.3 4,118,627 - HP15_3889 0.63 -1.4 4,118,694 - HP15_3889 0.71 +1.2 4,118,784 - HP15_3889 0.83 +0.9 4,118,893 + +1.9 4,118,895 + +1.8 4,118,895 + +0.4 4,118,900 + +0.9 4,118,906 + +0.4 4,118,986 + -0.7
Or see this region's nucleotide sequence