Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3845 and HP15_3846 are separated by 43 nucleotides HP15_3846 and HP15_3847 overlap by 4 nucleotides HP15_3847 and HP15_3848 overlap by 7 nucleotides HP15_3848 and HP15_3849 are separated by 254 nucleotides
HP15_3845: HP15_3845 - ADP-ribosylation/crystallin J1-like protein, at 4,071,539 to 4,072,711
_3845
HP15_3846: HP15_3846 - ethyl tert-butyl ether degradation EthD, at 4,072,755 to 4,073,066
_3846
HP15_3847: HP15_3847 - transmembrane transcriptional regulator (anti-Sigma-factor), at 4,073,063 to 4,073,329
_3847
HP15_3848: HP15_3848 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,073,323 to 4,073,940
_3848
HP15_3849: HP15_3849 - pyridine nucleotide-disulfide oxidoreductase dimerization region, at 4,074,195 to 4,076,384
_3849
Position (kb)
4073
4074 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4072.068 kb on - strand, within HP15_3845 at 4072.116 kb on + strand, within HP15_3845 at 4072.226 kb on + strand, within HP15_3845 at 4072.305 kb on + strand, within HP15_3845 at 4072.424 kb on - strand, within HP15_3845 at 4072.542 kb on - strand, within HP15_3845 at 4072.588 kb on + strand, within HP15_3845 at 4072.588 kb on + strand, within HP15_3845 at 4072.607 kb on + strand at 4072.701 kb on + strand at 4072.706 kb on + strand at 4072.781 kb on - strand at 4072.781 kb on - strand at 4072.811 kb on - strand, within HP15_3846 at 4072.889 kb on + strand, within HP15_3846 at 4072.970 kb on + strand, within HP15_3846 at 4073.015 kb on + strand, within HP15_3846 at 4073.183 kb on + strand, within HP15_3847 at 4073.266 kb on - strand, within HP15_3847 at 4073.408 kb on - strand, within HP15_3848 at 4073.408 kb on - strand, within HP15_3848 at 4073.480 kb on - strand, within HP15_3848 at 4073.494 kb on - strand, within HP15_3848 at 4073.494 kb on - strand, within HP15_3848 at 4073.496 kb on + strand, within HP15_3848 at 4073.506 kb on - strand, within HP15_3848 at 4073.627 kb on + strand, within HP15_3848 at 4073.638 kb on - strand, within HP15_3848 at 4073.666 kb on - strand, within HP15_3848 at 4073.708 kb on - strand, within HP15_3848 at 4073.766 kb on + strand, within HP15_3848 at 4073.897 kb on + strand at 4074.084 kb on + strand at 4074.103 kb on - strand at 4074.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 4,072,068 - HP15_3845 0.45 -0.0 4,072,116 + HP15_3845 0.49 -0.3 4,072,226 + HP15_3845 0.59 +0.2 4,072,305 + HP15_3845 0.65 -0.3 4,072,424 - HP15_3845 0.75 +1.5 4,072,542 - HP15_3845 0.86 -0.1 4,072,588 + HP15_3845 0.89 +0.1 4,072,588 + HP15_3845 0.89 -0.2 4,072,607 + -0.6 4,072,701 + +0.5 4,072,706 + +0.5 4,072,781 - +0.2 4,072,781 - -3.3 4,072,811 - HP15_3846 0.18 -0.3 4,072,889 + HP15_3846 0.43 +3.4 4,072,970 + HP15_3846 0.69 +0.5 4,073,015 + HP15_3846 0.83 +1.1 4,073,183 + HP15_3847 0.45 -0.8 4,073,266 - HP15_3847 0.76 -0.5 4,073,408 - HP15_3848 0.14 +0.4 4,073,408 - HP15_3848 0.14 +0.1 4,073,480 - HP15_3848 0.25 -0.7 4,073,494 - HP15_3848 0.28 +0.3 4,073,494 - HP15_3848 0.28 -0.3 4,073,496 + HP15_3848 0.28 -0.1 4,073,506 - HP15_3848 0.30 -0.1 4,073,627 + HP15_3848 0.49 +1.2 4,073,638 - HP15_3848 0.51 -2.2 4,073,666 - HP15_3848 0.56 +0.4 4,073,708 - HP15_3848 0.62 +1.3 4,073,766 + HP15_3848 0.72 +0.3 4,073,897 + -0.2 4,074,084 + -0.2 4,074,103 - -0.4 4,074,281 - +0.1
Or see this region's nucleotide sequence