Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3834 and HP15_3835 overlap by 4 nucleotides HP15_3835 and HP15_3836 are separated by 31 nucleotides HP15_3836 and HP15_3837 are separated by 93 nucleotides HP15_3837 and HP15_3838 are separated by 6 nucleotides
HP15_3834: HP15_3834 - glutathione S-transferase YghU, at 4,061,901 to 4,062,773
_3834
HP15_3835: HP15_3835 - conserved hypothetical protein, at 4,062,770 to 4,063,330
_3835
HP15_3836: HP15_3836 - hypothetical protein, at 4,063,362 to 4,063,544
_3836
HP15_3837: HP15_3837 - hypothetical spermidine synthase, at 4,063,638 to 4,064,381
_3837
HP15_3838: HP15_3838 - ankyrin-like protein, at 4,064,388 to 4,064,720
_3838
Position (kb)
4063
4064 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4062.403 kb on + strand, within HP15_3834 at 4062.405 kb on + strand, within HP15_3834 at 4062.466 kb on - strand, within HP15_3834 at 4062.480 kb on - strand, within HP15_3834 at 4062.483 kb on + strand, within HP15_3834 at 4062.610 kb on - strand, within HP15_3834 at 4062.633 kb on - strand, within HP15_3834 at 4062.666 kb on - strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.688 kb on - strand at 4062.688 kb on - strand at 4062.882 kb on - strand, within HP15_3835 at 4062.904 kb on - strand, within HP15_3835 at 4062.909 kb on - strand, within HP15_3835 at 4062.951 kb on + strand, within HP15_3835 at 4063.108 kb on + strand, within HP15_3835 at 4063.251 kb on + strand, within HP15_3835 at 4063.259 kb on - strand, within HP15_3835 at 4063.422 kb on - strand, within HP15_3836 at 4063.494 kb on + strand, within HP15_3836 at 4063.507 kb on - strand, within HP15_3836 at 4063.554 kb on - strand at 4063.647 kb on - strand at 4063.718 kb on + strand, within HP15_3837 at 4063.752 kb on + strand, within HP15_3837 at 4063.775 kb on - strand, within HP15_3837 at 4063.810 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.933 kb on + strand, within HP15_3837 at 4063.936 kb on - strand, within HP15_3837 at 4063.938 kb on + strand, within HP15_3837 at 4063.948 kb on + strand, within HP15_3837 at 4063.948 kb on + strand, within HP15_3837 at 4063.956 kb on - strand, within HP15_3837 at 4064.076 kb on + strand, within HP15_3837 at 4064.076 kb on + strand, within HP15_3837 at 4064.081 kb on + strand, within HP15_3837 at 4064.082 kb on - strand, within HP15_3837 at 4064.082 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.096 kb on + strand, within HP15_3837 at 4064.334 kb on + strand at 4064.358 kb on - strand at 4064.457 kb on - strand, within HP15_3838
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 4,062,403 + HP15_3834 0.58 +1.4 4,062,405 + HP15_3834 0.58 -0.6 4,062,466 - HP15_3834 0.65 -0.3 4,062,480 - HP15_3834 0.66 -0.2 4,062,483 + HP15_3834 0.67 -0.4 4,062,610 - HP15_3834 0.81 +0.2 4,062,633 - HP15_3834 0.84 +0.3 4,062,666 - HP15_3834 0.88 -0.6 4,062,680 + HP15_3834 0.89 +0.1 4,062,680 + HP15_3834 0.89 -2.0 4,062,680 + HP15_3834 0.89 +0.4 4,062,680 + HP15_3834 0.89 +0.4 4,062,688 - +0.4 4,062,688 - -0.8 4,062,882 - HP15_3835 0.20 +0.5 4,062,904 - HP15_3835 0.24 +1.2 4,062,909 - HP15_3835 0.25 +1.2 4,062,951 + HP15_3835 0.32 -0.1 4,063,108 + HP15_3835 0.60 +0.2 4,063,251 + HP15_3835 0.86 +0.1 4,063,259 - HP15_3835 0.87 -0.3 4,063,422 - HP15_3836 0.33 -0.5 4,063,494 + HP15_3836 0.72 +0.4 4,063,507 - HP15_3836 0.79 -1.8 4,063,554 - -0.3 4,063,647 - +0.9 4,063,718 + HP15_3837 0.11 +0.9 4,063,752 + HP15_3837 0.15 +1.5 4,063,775 - HP15_3837 0.18 -2.2 4,063,810 + HP15_3837 0.23 +1.7 4,063,928 + HP15_3837 0.39 +0.1 4,063,928 + HP15_3837 0.39 +0.4 4,063,928 + HP15_3837 0.39 +0.4 4,063,928 + HP15_3837 0.39 -0.1 4,063,933 + HP15_3837 0.40 +1.9 4,063,936 - HP15_3837 0.40 +0.1 4,063,938 + HP15_3837 0.40 +0.1 4,063,948 + HP15_3837 0.42 -1.0 4,063,948 + HP15_3837 0.42 +0.1 4,063,956 - HP15_3837 0.43 +0.3 4,064,076 + HP15_3837 0.59 +2.5 4,064,076 + HP15_3837 0.59 -0.1 4,064,081 + HP15_3837 0.60 +0.9 4,064,082 - HP15_3837 0.60 -1.6 4,064,082 - HP15_3837 0.60 +0.0 4,064,084 - HP15_3837 0.60 +0.1 4,064,084 - HP15_3837 0.60 -1.2 4,064,084 - HP15_3837 0.60 +0.2 4,064,084 - HP15_3837 0.60 +0.9 4,064,096 + HP15_3837 0.62 +0.4 4,064,334 + -0.1 4,064,358 - +0.9 4,064,457 - HP15_3838 0.21 +0.4
Or see this region's nucleotide sequence