Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3818 and HP15_3819 are separated by 9 nucleotides HP15_3819 and HP15_3820 are separated by 232 nucleotides
HP15_3818: HP15_3818 - extracellular nuclease, at 4,043,181 to 4,044,941
_3818
HP15_3819: HP15_3819 - transcriptional regulator, DeoR, predicted, at 4,044,951 to 4,045,892
_3819
HP15_3820: HP15_3820 - major facilitator superfamily MFS_1, at 4,046,125 to 4,047,408
_3820
Position (kb)
4044
4045
4046 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4043.958 kb on + strand, within HP15_3818 at 4043.966 kb on - strand, within HP15_3818 at 4044.082 kb on + strand, within HP15_3818 at 4044.158 kb on + strand, within HP15_3818 at 4044.158 kb on + strand, within HP15_3818 at 4044.273 kb on - strand, within HP15_3818 at 4044.289 kb on + strand, within HP15_3818 at 4044.297 kb on - strand, within HP15_3818 at 4044.392 kb on + strand, within HP15_3818 at 4044.480 kb on - strand, within HP15_3818 at 4044.550 kb on - strand, within HP15_3818 at 4044.564 kb on + strand, within HP15_3818 at 4044.572 kb on - strand, within HP15_3818 at 4044.801 kb on + strand at 4044.815 kb on - strand at 4044.941 kb on + strand at 4044.970 kb on + strand at 4045.131 kb on + strand, within HP15_3819 at 4045.382 kb on - strand, within HP15_3819 at 4045.606 kb on + strand, within HP15_3819 at 4045.774 kb on + strand, within HP15_3819 at 4045.917 kb on - strand at 4046.009 kb on + strand at 4046.029 kb on + strand at 4046.037 kb on - strand at 4046.056 kb on + strand at 4046.056 kb on + strand at 4046.117 kb on - strand at 4046.117 kb on - strand at 4046.141 kb on + strand at 4046.178 kb on + strand at 4046.186 kb on - strand at 4046.213 kb on + strand at 4046.268 kb on + strand, within HP15_3820 at 4046.299 kb on - strand, within HP15_3820 at 4046.306 kb on - strand, within HP15_3820 at 4046.350 kb on + strand, within HP15_3820 at 4046.382 kb on + strand, within HP15_3820 at 4046.670 kb on + strand, within HP15_3820 at 4046.688 kb on - strand, within HP15_3820 at 4046.748 kb on + strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.816 kb on + strand, within HP15_3820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 4,043,958 + HP15_3818 0.44 +0.8 4,043,966 - HP15_3818 0.45 +0.7 4,044,082 + HP15_3818 0.51 +0.9 4,044,158 + HP15_3818 0.55 -0.5 4,044,158 + HP15_3818 0.55 -0.5 4,044,273 - HP15_3818 0.62 -0.3 4,044,289 + HP15_3818 0.63 -0.8 4,044,297 - HP15_3818 0.63 +0.4 4,044,392 + HP15_3818 0.69 +0.8 4,044,480 - HP15_3818 0.74 +0.3 4,044,550 - HP15_3818 0.78 -1.4 4,044,564 + HP15_3818 0.79 -0.2 4,044,572 - HP15_3818 0.79 +0.3 4,044,801 + +0.7 4,044,815 - +0.6 4,044,941 + +0.7 4,044,970 + +0.1 4,045,131 + HP15_3819 0.19 +0.1 4,045,382 - HP15_3819 0.46 -3.0 4,045,606 + HP15_3819 0.70 -0.5 4,045,774 + HP15_3819 0.87 -0.7 4,045,917 - -0.3 4,046,009 + +1.3 4,046,029 + +1.9 4,046,037 - +1.4 4,046,056 + +1.2 4,046,056 + +0.4 4,046,117 - +0.4 4,046,117 - +0.9 4,046,141 + +0.9 4,046,178 + +2.7 4,046,186 - -0.3 4,046,213 + +2.4 4,046,268 + HP15_3820 0.11 +0.7 4,046,299 - HP15_3820 0.14 +0.0 4,046,306 - HP15_3820 0.14 +2.2 4,046,350 + HP15_3820 0.18 +0.4 4,046,382 + HP15_3820 0.20 +0.4 4,046,670 + HP15_3820 0.42 +0.8 4,046,688 - HP15_3820 0.44 -0.4 4,046,748 + HP15_3820 0.49 -0.3 4,046,803 - HP15_3820 0.53 +0.4 4,046,803 - HP15_3820 0.53 -0.1 4,046,816 + HP15_3820 0.54 -0.2
Or see this region's nucleotide sequence