Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3772 and HP15_3773 are separated by 15 nucleotides HP15_3773 and HP15_3774 are separated by 16 nucleotides HP15_3774 and HP15_3775 are separated by 10 nucleotides
HP15_3772: HP15_3772 - cytochrome c oxidase, subunit I, at 3,994,101 to 3,995,705
_3772
HP15_3773: HP15_3773 - cytochrome c oxidase assembly protein CtaG/Cox11, at 3,995,721 to 3,996,323
_3773
HP15_3774: HP15_3774 - cytochrome c oxidase subunit III, at 3,996,340 to 3,997,227
_3774
HP15_3775: HP15_3775 - conserved hypothetical protein, membrane, at 3,997,238 to 3,997,441
_3775
Position (kb)
3995
3996
3997 Strain fitness (log2 ratio)
-1
0
1
2 at 3994.774 kb on - strand, within HP15_3772 at 3994.856 kb on + strand, within HP15_3772 at 3994.864 kb on - strand, within HP15_3772 at 3994.868 kb on + strand, within HP15_3772 at 3994.876 kb on - strand, within HP15_3772 at 3994.890 kb on + strand, within HP15_3772 at 3994.892 kb on + strand, within HP15_3772 at 3994.892 kb on + strand, within HP15_3772 at 3994.900 kb on + strand, within HP15_3772 at 3994.908 kb on - strand, within HP15_3772 at 3995.022 kb on - strand, within HP15_3772 at 3995.034 kb on - strand, within HP15_3772 at 3995.069 kb on + strand, within HP15_3772 at 3995.075 kb on - strand, within HP15_3772 at 3995.094 kb on - strand, within HP15_3772 at 3995.113 kb on + strand, within HP15_3772 at 3995.121 kb on + strand, within HP15_3772 at 3995.129 kb on - strand, within HP15_3772 at 3995.152 kb on - strand, within HP15_3772 at 3995.154 kb on + strand, within HP15_3772 at 3995.161 kb on + strand, within HP15_3772 at 3995.161 kb on + strand, within HP15_3772 at 3995.161 kb on + strand, within HP15_3772 at 3995.169 kb on - strand, within HP15_3772 at 3995.169 kb on - strand, within HP15_3772 at 3995.180 kb on - strand, within HP15_3772 at 3995.239 kb on - strand, within HP15_3772 at 3995.263 kb on - strand, within HP15_3772 at 3995.322 kb on - strand, within HP15_3772 at 3995.372 kb on + strand, within HP15_3772 at 3995.527 kb on - strand, within HP15_3772 at 3995.588 kb on + strand at 3995.596 kb on - strand at 3995.626 kb on - strand at 3995.631 kb on + strand at 3995.646 kb on - strand at 3995.654 kb on + strand at 3995.783 kb on - strand, within HP15_3773 at 3995.794 kb on + strand, within HP15_3773 at 3995.896 kb on + strand, within HP15_3773 at 3995.979 kb on - strand, within HP15_3773 at 3995.988 kb on + strand, within HP15_3773 at 3995.988 kb on + strand, within HP15_3773 at 3995.988 kb on + strand, within HP15_3773 at 3995.996 kb on + strand, within HP15_3773 at 3995.996 kb on - strand, within HP15_3773 at 3996.050 kb on + strand, within HP15_3773 at 3996.058 kb on - strand, within HP15_3773 at 3996.058 kb on - strand, within HP15_3773 at 3996.081 kb on + strand, within HP15_3773 at 3996.088 kb on + strand, within HP15_3773 at 3996.088 kb on + strand, within HP15_3773 at 3996.239 kb on + strand, within HP15_3773 at 3996.247 kb on - strand, within HP15_3773 at 3996.269 kb on + strand at 3996.317 kb on + strand at 3996.564 kb on + strand, within HP15_3774 at 3996.648 kb on + strand, within HP15_3774 at 3996.672 kb on + strand, within HP15_3774 at 3996.737 kb on + strand, within HP15_3774 at 3996.737 kb on + strand, within HP15_3774 at 3996.748 kb on + strand, within HP15_3774 at 3996.756 kb on - strand, within HP15_3774 at 3996.788 kb on - strand, within HP15_3774 at 3996.801 kb on + strand, within HP15_3774 at 3996.846 kb on + strand, within HP15_3774 at 3996.886 kb on - strand, within HP15_3774 at 3996.915 kb on + strand, within HP15_3774 at 3996.932 kb on + strand, within HP15_3774 at 3997.051 kb on + strand, within HP15_3774 at 3997.308 kb on - strand, within HP15_3775 at 3997.316 kb on + strand, within HP15_3775
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,994,774 - HP15_3772 0.42 +0.4 3,994,856 + HP15_3772 0.47 +0.1 3,994,864 - HP15_3772 0.48 -0.1 3,994,868 + HP15_3772 0.48 +1.0 3,994,876 - HP15_3772 0.48 +0.4 3,994,890 + HP15_3772 0.49 +1.4 3,994,892 + HP15_3772 0.49 -0.8 3,994,892 + HP15_3772 0.49 -0.8 3,994,900 + HP15_3772 0.50 -0.2 3,994,908 - HP15_3772 0.50 +0.1 3,995,022 - HP15_3772 0.57 +0.8 3,995,034 - HP15_3772 0.58 -0.2 3,995,069 + HP15_3772 0.60 +0.2 3,995,075 - HP15_3772 0.61 +0.2 3,995,094 - HP15_3772 0.62 +1.1 3,995,113 + HP15_3772 0.63 -0.6 3,995,121 + HP15_3772 0.64 +0.4 3,995,129 - HP15_3772 0.64 +0.3 3,995,152 - HP15_3772 0.65 +0.2 3,995,154 + HP15_3772 0.66 +0.2 3,995,161 + HP15_3772 0.66 +0.4 3,995,161 + HP15_3772 0.66 -0.2 3,995,161 + HP15_3772 0.66 +2.4 3,995,169 - HP15_3772 0.67 -0.3 3,995,169 - HP15_3772 0.67 -0.0 3,995,180 - HP15_3772 0.67 +0.4 3,995,239 - HP15_3772 0.71 +0.5 3,995,263 - HP15_3772 0.72 -0.2 3,995,322 - HP15_3772 0.76 +1.2 3,995,372 + HP15_3772 0.79 -1.4 3,995,527 - HP15_3772 0.89 -1.1 3,995,588 + +0.4 3,995,596 - -0.1 3,995,626 - -0.5 3,995,631 + -0.1 3,995,646 - +0.2 3,995,654 + +0.5 3,995,783 - HP15_3773 0.10 +0.5 3,995,794 + HP15_3773 0.12 +0.9 3,995,896 + HP15_3773 0.29 -0.3 3,995,979 - HP15_3773 0.43 -0.1 3,995,988 + HP15_3773 0.44 -0.1 3,995,988 + HP15_3773 0.44 +0.4 3,995,988 + HP15_3773 0.44 +0.2 3,995,996 + HP15_3773 0.46 +0.8 3,995,996 - HP15_3773 0.46 +0.2 3,996,050 + HP15_3773 0.55 +0.8 3,996,058 - HP15_3773 0.56 -0.3 3,996,058 - HP15_3773 0.56 +0.2 3,996,081 + HP15_3773 0.60 +0.8 3,996,088 + HP15_3773 0.61 -0.1 3,996,088 + HP15_3773 0.61 +0.8 3,996,239 + HP15_3773 0.86 +1.1 3,996,247 - HP15_3773 0.87 +1.1 3,996,269 + +0.1 3,996,317 + -1.0 3,996,564 + HP15_3774 0.25 +0.1 3,996,648 + HP15_3774 0.35 +2.5 3,996,672 + HP15_3774 0.37 -0.3 3,996,737 + HP15_3774 0.45 +0.0 3,996,737 + HP15_3774 0.45 +0.1 3,996,748 + HP15_3774 0.46 +1.4 3,996,756 - HP15_3774 0.47 -0.7 3,996,788 - HP15_3774 0.50 +0.3 3,996,801 + HP15_3774 0.52 -0.2 3,996,846 + HP15_3774 0.57 -0.3 3,996,886 - HP15_3774 0.61 +0.4 3,996,915 + HP15_3774 0.65 +0.9 3,996,932 + HP15_3774 0.67 -0.9 3,997,051 + HP15_3774 0.80 +0.2 3,997,308 - HP15_3775 0.34 +0.6 3,997,316 + HP15_3775 0.38 +0.4
Or see this region's nucleotide sequence