Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02300

Experiment: m.b. syringaldehyde 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02290 and PGA1_262p02300 are separated by 25 nucleotidesPGA1_262p02300 and PGA1_262p02310 are separated by 122 nucleotidesPGA1_262p02310 and PGA1_262p02320 are separated by 3 nucleotides PGA1_262p02290: PGA1_262p02290 - sugar isomerase-like protein, at 250,675 to 251,583 _262p02290 PGA1_262p02300: PGA1_262p02300 - UDP-glucose/GDP-mannose dehydrogenase, at 251,609 to 252,880 _262p02300 PGA1_262p02310: PGA1_262p02310 - amidinotransferase, at 253,003 to 253,785 _262p02310 PGA1_262p02320: PGA1_262p02320 - putative acetolactate synthase isozyme 1 large subunit, at 253,789 to 255,444 _262p02320 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2at 250.667 kb on - strandat 250.840 kb on - strand, within PGA1_262p02290at 250.857 kb on + strand, within PGA1_262p02290at 251.070 kb on - strand, within PGA1_262p02290at 251.094 kb on - strand, within PGA1_262p02290at 251.094 kb on - strand, within PGA1_262p02290at 251.173 kb on + strand, within PGA1_262p02290at 251.191 kb on - strand, within PGA1_262p02290at 251.205 kb on + strand, within PGA1_262p02290at 251.425 kb on - strand, within PGA1_262p02290at 251.446 kb on + strand, within PGA1_262p02290at 251.478 kb on + strand, within PGA1_262p02290at 251.889 kb on - strand, within PGA1_262p02300at 252.116 kb on + strand, within PGA1_262p02300at 252.116 kb on + strand, within PGA1_262p02300at 252.124 kb on - strand, within PGA1_262p02300at 252.212 kb on - strand, within PGA1_262p02300at 252.359 kb on - strand, within PGA1_262p02300at 252.372 kb on - strand, within PGA1_262p02300at 252.424 kb on + strand, within PGA1_262p02300at 252.429 kb on + strand, within PGA1_262p02300at 252.437 kb on - strand, within PGA1_262p02300at 252.437 kb on - strand, within PGA1_262p02300at 252.523 kb on - strand, within PGA1_262p02300at 252.710 kb on - strand, within PGA1_262p02300at 252.836 kb on + strandat 252.949 kb on - strandat 253.203 kb on + strand, within PGA1_262p02310at 253.290 kb on - strand, within PGA1_262p02310at 253.290 kb on - strand, within PGA1_262p02310at 253.372 kb on + strand, within PGA1_262p02310at 253.445 kb on + strand, within PGA1_262p02310at 253.469 kb on - strand, within PGA1_262p02310at 253.623 kb on + strand, within PGA1_262p02310at 253.623 kb on + strand, within PGA1_262p02310at 253.631 kb on - strand, within PGA1_262p02310at 253.694 kb on - strand, within PGA1_262p02310at 253.694 kb on - strand, within PGA1_262p02310at 253.765 kb on + strandat 253.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM
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250,667 - -0.8
250,840 - PGA1_262p02290 0.18 -0.1
250,857 + PGA1_262p02290 0.20 +0.8
251,070 - PGA1_262p02290 0.43 +0.7
251,094 - PGA1_262p02290 0.46 +0.2
251,094 - PGA1_262p02290 0.46 +0.4
251,173 + PGA1_262p02290 0.55 +0.1
251,191 - PGA1_262p02290 0.57 -1.7
251,205 + PGA1_262p02290 0.58 -0.3
251,425 - PGA1_262p02290 0.83 -0.1
251,446 + PGA1_262p02290 0.85 -0.5
251,478 + PGA1_262p02290 0.88 -0.1
251,889 - PGA1_262p02300 0.22 -0.6
252,116 + PGA1_262p02300 0.40 -1.2
252,116 + PGA1_262p02300 0.40 -1.4
252,124 - PGA1_262p02300 0.40 -1.8
252,212 - PGA1_262p02300 0.47 -2.7
252,359 - PGA1_262p02300 0.59 -0.8
252,372 - PGA1_262p02300 0.60 -0.6
252,424 + PGA1_262p02300 0.64 -1.7
252,429 + PGA1_262p02300 0.64 -1.4
252,437 - PGA1_262p02300 0.65 -1.7
252,437 - PGA1_262p02300 0.65 +0.1
252,523 - PGA1_262p02300 0.72 -0.4
252,710 - PGA1_262p02300 0.87 +0.2
252,836 + -0.0
252,949 - +0.6
253,203 + PGA1_262p02310 0.26 -1.2
253,290 - PGA1_262p02310 0.37 +0.8
253,290 - PGA1_262p02310 0.37 -1.3
253,372 + PGA1_262p02310 0.47 +0.9
253,445 + PGA1_262p02310 0.56 -0.2
253,469 - PGA1_262p02310 0.60 +0.5
253,623 + PGA1_262p02310 0.79 -0.5
253,623 + PGA1_262p02310 0.79 +1.7
253,631 - PGA1_262p02310 0.80 +0.7
253,694 - PGA1_262p02310 0.88 -0.4
253,694 - PGA1_262p02310 0.88 +0.7
253,765 + +1.8
253,878 - +0.1

Or see this region's nucleotide sequence