Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3711 and HP15_3712 are separated by 67 nucleotides HP15_3712 and HP15_3713 overlap by 4 nucleotides
HP15_3711: HP15_3711 - sensory box/GGDEF/GAF/EAL domain protein, at 3,919,846 to 3,921,195
_3711
HP15_3712: HP15_3712 - exonuclease V subunit alpha, at 3,921,263 to 3,923,536
_3712
HP15_3713: HP15_3713 - exodeoxyribonuclease V, beta subunit, at 3,923,533 to 3,927,237
_3713
Position (kb)
3921
3922
3923
3924 Strain fitness (log2 ratio)
-2
-1
0
1 at 3920.281 kb on - strand, within HP15_3711 at 3920.351 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.458 kb on + strand, within HP15_3711 at 3920.466 kb on - strand, within HP15_3711 at 3920.506 kb on + strand, within HP15_3711 at 3920.543 kb on - strand, within HP15_3711 at 3920.589 kb on + strand, within HP15_3711 at 3920.762 kb on + strand, within HP15_3711 at 3920.762 kb on + strand, within HP15_3711 at 3920.770 kb on - strand, within HP15_3711 at 3920.793 kb on + strand, within HP15_3711 at 3920.975 kb on + strand, within HP15_3711 at 3921.002 kb on - strand, within HP15_3711 at 3921.083 kb on - strand at 3921.204 kb on + strand at 3921.212 kb on - strand at 3921.225 kb on - strand at 3921.401 kb on - strand at 3921.403 kb on + strand at 3921.418 kb on - strand at 3921.457 kb on - strand at 3921.484 kb on + strand at 3921.494 kb on - strand, within HP15_3712 at 3921.501 kb on + strand, within HP15_3712 at 3921.501 kb on + strand, within HP15_3712 at 3921.588 kb on - strand, within HP15_3712 at 3922.013 kb on + strand, within HP15_3712 at 3922.137 kb on + strand, within HP15_3712 at 3922.148 kb on + strand, within HP15_3712 at 3922.182 kb on + strand, within HP15_3712 at 3922.205 kb on - strand, within HP15_3712 at 3922.859 kb on + strand, within HP15_3712 at 3923.176 kb on + strand, within HP15_3712 at 3923.359 kb on - strand at 3923.380 kb on - strand at 3923.469 kb on + strand at 3923.469 kb on + strand at 3923.477 kb on - strand at 3923.477 kb on - strand at 3923.569 kb on - strand at 3923.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,920,281 - HP15_3711 0.32 +1.1 3,920,351 + HP15_3711 0.37 +0.8 3,920,458 + HP15_3711 0.45 -1.0 3,920,458 + HP15_3711 0.45 +0.1 3,920,458 + HP15_3711 0.45 -1.6 3,920,458 + HP15_3711 0.45 -0.3 3,920,458 + HP15_3711 0.45 -1.2 3,920,458 + HP15_3711 0.45 -0.4 3,920,458 + HP15_3711 0.45 -0.3 3,920,458 + HP15_3711 0.45 +0.4 3,920,466 - HP15_3711 0.46 +0.4 3,920,506 + HP15_3711 0.49 -0.0 3,920,543 - HP15_3711 0.52 -0.6 3,920,589 + HP15_3711 0.55 +1.0 3,920,762 + HP15_3711 0.68 -0.0 3,920,762 + HP15_3711 0.68 +0.3 3,920,770 - HP15_3711 0.68 +0.1 3,920,793 + HP15_3711 0.70 -0.0 3,920,975 + HP15_3711 0.84 -0.3 3,921,002 - HP15_3711 0.86 +1.4 3,921,083 - -0.1 3,921,204 + +1.4 3,921,212 - +0.1 3,921,225 - +0.2 3,921,401 - -0.2 3,921,403 + +0.3 3,921,418 - -0.5 3,921,457 - +1.2 3,921,484 + -0.7 3,921,494 - HP15_3712 0.10 -0.5 3,921,501 + HP15_3712 0.10 -0.2 3,921,501 + HP15_3712 0.10 -1.3 3,921,588 - HP15_3712 0.14 -1.5 3,922,013 + HP15_3712 0.33 -0.8 3,922,137 + HP15_3712 0.38 -0.9 3,922,148 + HP15_3712 0.39 -2.4 3,922,182 + HP15_3712 0.40 +1.5 3,922,205 - HP15_3712 0.41 -1.2 3,922,859 + HP15_3712 0.70 +0.1 3,923,176 + HP15_3712 0.84 -0.5 3,923,359 - -0.0 3,923,380 - -0.9 3,923,469 + -0.1 3,923,469 + -0.6 3,923,477 - -0.6 3,923,477 - -0.4 3,923,569 - -0.4 3,923,769 + -1.7
Or see this region's nucleotide sequence