Strain Fitness in Marinobacter adhaerens HP15 around HP15_3670

Experiment: m.b. Ceftazidime 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3669 and HP15_3670 overlap by 4 nucleotidesHP15_3670 and HP15_3671 are separated by 20 nucleotides HP15_3669: HP15_3669 - sensory box sensor histidine kinase, at 3,866,959 to 3,867,720 _3669 HP15_3670: HP15_3670 - phosphonate ABC transporter, periplasmic phosphonate-binding protein, at 3,867,717 to 3,868,544 _3670 HP15_3671: HP15_3671 - sensory box/GGDEF family protein, at 3,868,565 to 3,870,502 _3671 Position (kb) 3867 3868 3869Strain fitness (log2 ratio) -1 0 1 2at 3866.933 kb on + strandat 3866.999 kb on + strandat 3867.038 kb on - strand, within HP15_3669at 3867.094 kb on + strand, within HP15_3669at 3867.193 kb on + strand, within HP15_3669at 3867.209 kb on + strand, within HP15_3669at 3867.224 kb on + strand, within HP15_3669at 3867.232 kb on - strand, within HP15_3669at 3867.252 kb on + strand, within HP15_3669at 3867.347 kb on + strand, within HP15_3669at 3867.355 kb on - strand, within HP15_3669at 3867.355 kb on - strand, within HP15_3669at 3867.355 kb on - strand, within HP15_3669at 3867.522 kb on - strand, within HP15_3669at 3867.539 kb on - strand, within HP15_3669at 3867.646 kb on - strandat 3867.649 kb on - strandat 3867.735 kb on - strandat 3867.772 kb on - strandat 3867.896 kb on + strand, within HP15_3670at 3867.923 kb on + strand, within HP15_3670at 3867.966 kb on - strand, within HP15_3670at 3867.968 kb on - strand, within HP15_3670at 3867.980 kb on - strand, within HP15_3670at 3867.980 kb on - strand, within HP15_3670at 3868.085 kb on + strand, within HP15_3670at 3868.149 kb on + strand, within HP15_3670at 3868.156 kb on + strand, within HP15_3670at 3868.257 kb on + strand, within HP15_3670at 3868.300 kb on - strand, within HP15_3670at 3868.321 kb on + strand, within HP15_3670at 3868.342 kb on - strand, within HP15_3670at 3868.414 kb on + strand, within HP15_3670at 3868.414 kb on + strand, within HP15_3670at 3868.417 kb on - strand, within HP15_3670at 3868.503 kb on + strandat 3868.506 kb on - strandat 3868.648 kb on + strandat 3868.684 kb on - strandat 3868.739 kb on - strandat 3868.810 kb on + strand, within HP15_3671at 3868.854 kb on + strand, within HP15_3671at 3868.891 kb on - strand, within HP15_3671at 3868.929 kb on - strand, within HP15_3671at 3868.938 kb on + strand, within HP15_3671at 3869.038 kb on - strand, within HP15_3671at 3869.040 kb on - strand, within HP15_3671at 3869.067 kb on - strand, within HP15_3671at 3869.092 kb on + strand, within HP15_3671at 3869.239 kb on - strand, within HP15_3671at 3869.328 kb on - strand, within HP15_3671at 3869.368 kb on - strand, within HP15_3671at 3869.429 kb on - strand, within HP15_3671at 3869.532 kb on - strand, within HP15_3671at 3869.532 kb on - strand, within HP15_3671

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
remove
3,866,933 + +0.5
3,866,999 + +0.3
3,867,038 - HP15_3669 0.10 +0.1
3,867,094 + HP15_3669 0.18 -1.6
3,867,193 + HP15_3669 0.31 -0.4
3,867,209 + HP15_3669 0.33 -0.6
3,867,224 + HP15_3669 0.35 -0.5
3,867,232 - HP15_3669 0.36 +0.1
3,867,252 + HP15_3669 0.38 -0.4
3,867,347 + HP15_3669 0.51 -0.6
3,867,355 - HP15_3669 0.52 -1.0
3,867,355 - HP15_3669 0.52 -0.3
3,867,355 - HP15_3669 0.52 -0.1
3,867,522 - HP15_3669 0.74 +0.0
3,867,539 - HP15_3669 0.76 +0.4
3,867,646 - +0.2
3,867,649 - -0.2
3,867,735 - -0.1
3,867,772 - -0.4
3,867,896 + HP15_3670 0.22 -1.2
3,867,923 + HP15_3670 0.25 +0.2
3,867,966 - HP15_3670 0.30 +0.1
3,867,968 - HP15_3670 0.30 -1.5
3,867,980 - HP15_3670 0.32 -0.4
3,867,980 - HP15_3670 0.32 +0.1
3,868,085 + HP15_3670 0.44 -1.2
3,868,149 + HP15_3670 0.52 -0.6
3,868,156 + HP15_3670 0.53 +2.7
3,868,257 + HP15_3670 0.65 -0.7
3,868,300 - HP15_3670 0.70 -0.1
3,868,321 + HP15_3670 0.73 +0.8
3,868,342 - HP15_3670 0.75 -0.4
3,868,414 + HP15_3670 0.84 +0.1
3,868,414 + HP15_3670 0.84 -0.9
3,868,417 - HP15_3670 0.85 +1.4
3,868,503 + -0.1
3,868,506 - -0.0
3,868,648 + -0.6
3,868,684 - +1.6
3,868,739 - -0.2
3,868,810 + HP15_3671 0.13 -0.4
3,868,854 + HP15_3671 0.15 -0.3
3,868,891 - HP15_3671 0.17 +0.5
3,868,929 - HP15_3671 0.19 +0.9
3,868,938 + HP15_3671 0.19 +0.0
3,869,038 - HP15_3671 0.24 +0.6
3,869,040 - HP15_3671 0.25 +2.2
3,869,067 - HP15_3671 0.26 -0.8
3,869,092 + HP15_3671 0.27 -0.3
3,869,239 - HP15_3671 0.35 +0.2
3,869,328 - HP15_3671 0.39 -0.1
3,869,368 - HP15_3671 0.41 -0.1
3,869,429 - HP15_3671 0.45 -0.1
3,869,532 - HP15_3671 0.50 +0.3
3,869,532 - HP15_3671 0.50 -0.4

Or see this region's nucleotide sequence