Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3626 and HP15_3627 are separated by 63 nucleotides HP15_3627 and HP15_3628 are separated by 20 nucleotides HP15_3628 and HP15_3629 are separated by 70 nucleotides HP15_3629 and HP15_3630 are separated by 140 nucleotides HP15_3630 and HP15_3631 overlap by 14 nucleotides
HP15_3626: HP15_3626 - betaine aldehyde dehydrogenase, at 3,822,373 to 3,823,842
_3626
HP15_3627: HP15_3627 - transcriptional regulator, TetR family, at 3,823,906 to 3,824,499
_3627
HP15_3628: HP15_3628 - hypothetical protein, at 3,824,520 to 3,824,624
_3628
HP15_3629: HP15_3629 - conserved hypothetical protein, at 3,824,695 to 3,824,907
_3629
HP15_3630: HP15_3630 - hypothetical protein, at 3,825,048 to 3,825,161
_3630
HP15_3631: HP15_3631 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,825,148 to 3,827,748
_3631
Position (kb)
3824
3825 Strain fitness (log2 ratio)
-1
0
1 at 3823.569 kb on + strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.577 kb on - strand, within HP15_3626 at 3823.649 kb on - strand, within HP15_3626 at 3823.649 kb on - strand, within HP15_3626 at 3823.730 kb on - strand at 3823.738 kb on + strand at 3823.739 kb on + strand at 3823.821 kb on - strand at 3823.886 kb on - strand at 3823.921 kb on + strand at 3823.921 kb on + strand at 3823.990 kb on + strand, within HP15_3627 at 3824.188 kb on - strand, within HP15_3627 at 3824.332 kb on - strand, within HP15_3627 at 3824.336 kb on - strand, within HP15_3627 at 3824.374 kb on + strand, within HP15_3627 at 3824.382 kb on - strand, within HP15_3627 at 3824.408 kb on + strand, within HP15_3627 at 3824.408 kb on - strand, within HP15_3627 at 3824.420 kb on + strand, within HP15_3627 at 3824.468 kb on - strand at 3824.613 kb on + strand, within HP15_3628 at 3824.723 kb on + strand, within HP15_3629 at 3824.731 kb on - strand, within HP15_3629 at 3824.731 kb on - strand, within HP15_3629 at 3824.731 kb on - strand, within HP15_3629 at 3824.789 kb on - strand, within HP15_3629 at 3824.934 kb on + strand at 3825.006 kb on + strand at 3825.153 kb on + strand at 3825.153 kb on + strand at 3825.158 kb on + strand at 3825.166 kb on - strand at 3825.193 kb on - strand at 3825.193 kb on - strand at 3825.298 kb on - strand at 3825.342 kb on + strand at 3825.350 kb on - strand at 3825.450 kb on + strand, within HP15_3631 at 3825.486 kb on + strand, within HP15_3631 at 3825.538 kb on + strand, within HP15_3631 at 3825.589 kb on + strand, within HP15_3631 at 3825.589 kb on + strand, within HP15_3631 at 3825.597 kb on - strand, within HP15_3631 at 3825.600 kb on + strand, within HP15_3631
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,823,569 + HP15_3626 0.81 -0.1 3,823,577 - HP15_3626 0.82 +0.5 3,823,577 - HP15_3626 0.82 -0.3 3,823,577 - HP15_3626 0.82 -0.4 3,823,577 - HP15_3626 0.82 -1.2 3,823,649 - HP15_3626 0.87 -0.4 3,823,649 - HP15_3626 0.87 -1.5 3,823,730 - -0.3 3,823,738 + -0.6 3,823,739 + +0.2 3,823,821 - +0.2 3,823,886 - -0.3 3,823,921 + +0.5 3,823,921 + -0.3 3,823,990 + HP15_3627 0.14 -0.3 3,824,188 - HP15_3627 0.47 +0.6 3,824,332 - HP15_3627 0.72 +0.9 3,824,336 - HP15_3627 0.72 -0.1 3,824,374 + HP15_3627 0.79 +0.2 3,824,382 - HP15_3627 0.80 +1.4 3,824,408 + HP15_3627 0.85 -0.6 3,824,408 - HP15_3627 0.85 +0.1 3,824,420 + HP15_3627 0.87 -0.1 3,824,468 - -0.4 3,824,613 + HP15_3628 0.89 -0.6 3,824,723 + HP15_3629 0.13 +1.4 3,824,731 - HP15_3629 0.17 -1.2 3,824,731 - HP15_3629 0.17 +0.5 3,824,731 - HP15_3629 0.17 +0.1 3,824,789 - HP15_3629 0.44 +1.1 3,824,934 + +0.4 3,825,006 + +0.2 3,825,153 + +0.0 3,825,153 + +0.6 3,825,158 + -0.2 3,825,166 - +0.1 3,825,193 - +0.9 3,825,193 - -0.3 3,825,298 - -0.1 3,825,342 + -1.2 3,825,350 - +1.4 3,825,450 + HP15_3631 0.12 -0.5 3,825,486 + HP15_3631 0.13 -0.1 3,825,538 + HP15_3631 0.15 +1.4 3,825,589 + HP15_3631 0.17 -0.5 3,825,589 + HP15_3631 0.17 +0.1 3,825,597 - HP15_3631 0.17 +0.4 3,825,600 + HP15_3631 0.17 +0.1
Or see this region's nucleotide sequence