Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3581 and HP15_3582 are separated by 14 nucleotides HP15_3582 and HP15_3583 overlap by 1 nucleotides HP15_3583 and HP15_3584 are separated by 5 nucleotides
HP15_3581: HP15_3581 - iron ABC transporter periplasmic binding protein, at 3,772,296 to 3,773,306
_3581
HP15_3582: HP15_3582 - transport system permease protein, at 3,773,321 to 3,774,301
_3582
HP15_3583: HP15_3583 - iron compound ABC transporter, ATP-binding protein, at 3,774,301 to 3,775,089
_3583
HP15_3584: HP15_3584 - transcriptional regulator, LysR family protein, at 3,775,095 to 3,776,042
_3584
Position (kb)
3773
3774
3775 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3772.335 kb on + strand at 3772.335 kb on + strand at 3772.335 kb on + strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.454 kb on + strand, within HP15_3581 at 3772.499 kb on - strand, within HP15_3581 at 3772.579 kb on - strand, within HP15_3581 at 3772.623 kb on - strand, within HP15_3581 at 3772.806 kb on + strand, within HP15_3581 at 3772.808 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.824 kb on + strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.841 kb on - strand, within HP15_3581 at 3772.948 kb on + strand, within HP15_3581 at 3772.966 kb on - strand, within HP15_3581 at 3772.966 kb on - strand, within HP15_3581 at 3773.039 kb on - strand, within HP15_3581 at 3773.174 kb on - strand, within HP15_3581 at 3773.269 kb on + strand at 3773.269 kb on + strand at 3773.296 kb on + strand at 3773.334 kb on + strand at 3773.334 kb on + strand at 3773.339 kb on + strand at 3773.339 kb on + strand at 3773.342 kb on - strand at 3773.342 kb on - strand at 3773.342 kb on - strand at 3773.347 kb on - strand at 3773.347 kb on - strand at 3773.360 kb on - strand at 3773.397 kb on + strand at 3773.437 kb on + strand, within HP15_3582 at 3773.437 kb on + strand, within HP15_3582 at 3773.714 kb on - strand, within HP15_3582 at 3773.721 kb on + strand, within HP15_3582 at 3773.794 kb on + strand, within HP15_3582 at 3773.800 kb on + strand, within HP15_3582 at 3773.808 kb on - strand, within HP15_3582 at 3773.839 kb on - strand, within HP15_3582 at 3773.864 kb on + strand, within HP15_3582 at 3773.958 kb on + strand, within HP15_3582 at 3773.966 kb on - strand, within HP15_3582 at 3773.966 kb on - strand, within HP15_3582 at 3774.069 kb on - strand, within HP15_3582 at 3774.078 kb on - strand, within HP15_3582 at 3774.157 kb on + strand, within HP15_3582 at 3774.311 kb on + strand at 3774.356 kb on + strand at 3774.356 kb on + strand at 3774.470 kb on - strand, within HP15_3583 at 3774.483 kb on + strand, within HP15_3583 at 3774.491 kb on - strand, within HP15_3583 at 3774.582 kb on - strand, within HP15_3583 at 3774.765 kb on - strand, within HP15_3583 at 3774.784 kb on + strand, within HP15_3583 at 3774.827 kb on - strand, within HP15_3583 at 3774.843 kb on - strand, within HP15_3583 at 3774.886 kb on - strand, within HP15_3583 at 3774.891 kb on - strand, within HP15_3583 at 3774.904 kb on + strand, within HP15_3583 at 3774.982 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.999 kb on + strand, within HP15_3583 at 3775.000 kb on - strand, within HP15_3583 at 3775.000 kb on - strand, within HP15_3583 at 3775.017 kb on - strand at 3775.038 kb on - strand at 3775.077 kb on - strand at 3775.092 kb on - strand at 3775.294 kb on - strand, within HP15_3584
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,772,335 + -0.6 3,772,335 + +1.4 3,772,335 + +0.4 3,772,343 - +0.8 3,772,343 - +0.4 3,772,343 - -1.2 3,772,343 - +0.4 3,772,454 + HP15_3581 0.16 -0.4 3,772,499 - HP15_3581 0.20 +0.8 3,772,579 - HP15_3581 0.28 +1.0 3,772,623 - HP15_3581 0.32 +0.5 3,772,806 + HP15_3581 0.50 -0.5 3,772,808 + HP15_3581 0.51 +0.0 3,772,823 + HP15_3581 0.52 +0.2 3,772,823 + HP15_3581 0.52 +0.0 3,772,823 + HP15_3581 0.52 -0.4 3,772,824 + HP15_3581 0.52 +1.3 3,772,831 - HP15_3581 0.53 +0.1 3,772,831 - HP15_3581 0.53 +0.1 3,772,831 - HP15_3581 0.53 +0.4 3,772,831 - HP15_3581 0.53 -0.4 3,772,831 - HP15_3581 0.53 +0.4 3,772,831 - HP15_3581 0.53 -0.1 3,772,841 - HP15_3581 0.54 +1.2 3,772,948 + HP15_3581 0.64 -0.8 3,772,966 - HP15_3581 0.66 +0.2 3,772,966 - HP15_3581 0.66 -0.3 3,773,039 - HP15_3581 0.73 -0.4 3,773,174 - HP15_3581 0.87 +0.9 3,773,269 + -0.0 3,773,269 + -0.5 3,773,296 + +1.4 3,773,334 + +0.7 3,773,334 + -0.4 3,773,339 + -0.6 3,773,339 + +0.4 3,773,342 - -0.2 3,773,342 - -0.7 3,773,342 - +0.9 3,773,347 - -0.3 3,773,347 - -0.6 3,773,360 - +1.3 3,773,397 + +0.3 3,773,437 + HP15_3582 0.12 +0.5 3,773,437 + HP15_3582 0.12 +2.0 3,773,714 - HP15_3582 0.40 +0.4 3,773,721 + HP15_3582 0.41 -0.3 3,773,794 + HP15_3582 0.48 +0.2 3,773,800 + HP15_3582 0.49 +1.1 3,773,808 - HP15_3582 0.50 -0.3 3,773,839 - HP15_3582 0.53 +0.5 3,773,864 + HP15_3582 0.55 -0.1 3,773,958 + HP15_3582 0.65 -0.4 3,773,966 - HP15_3582 0.66 -0.7 3,773,966 - HP15_3582 0.66 +0.8 3,774,069 - HP15_3582 0.76 +0.1 3,774,078 - HP15_3582 0.77 +0.0 3,774,157 + HP15_3582 0.85 -0.2 3,774,311 + -0.4 3,774,356 + +2.0 3,774,356 + +0.7 3,774,470 - HP15_3583 0.21 -2.2 3,774,483 + HP15_3583 0.23 -0.3 3,774,491 - HP15_3583 0.24 -0.2 3,774,582 - HP15_3583 0.36 +0.7 3,774,765 - HP15_3583 0.59 -0.6 3,774,784 + HP15_3583 0.61 +2.7 3,774,827 - HP15_3583 0.67 +0.1 3,774,843 - HP15_3583 0.69 -1.1 3,774,886 - HP15_3583 0.74 +1.5 3,774,891 - HP15_3583 0.75 +0.3 3,774,904 + HP15_3583 0.76 +1.9 3,774,982 + HP15_3583 0.86 +0.5 3,774,992 + HP15_3583 0.88 +0.8 3,774,992 + HP15_3583 0.88 -0.4 3,774,992 + HP15_3583 0.88 +0.3 3,774,992 + HP15_3583 0.88 -0.3 3,774,992 + HP15_3583 0.88 -0.0 3,774,999 + HP15_3583 0.88 -0.3 3,775,000 - HP15_3583 0.89 +0.3 3,775,000 - HP15_3583 0.89 -0.9 3,775,017 - -0.0 3,775,038 - -0.1 3,775,077 - +1.3 3,775,092 - +0.1 3,775,294 - HP15_3584 0.21 +1.3
Or see this region's nucleotide sequence