Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3556 and HP15_3557 overlap by 4 nucleotides HP15_3557 and HP15_3558 overlap by 1 nucleotides HP15_3558 and HP15_3559 are separated by 1 nucleotides
HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637
_3556
HP15_3557: HP15_3557 - conserved hypothetical protein, secreted, at 3,747,634 to 3,748,095
_3557
HP15_3558: HP15_3558 - conserved hypothetical protein, secreted, at 3,748,095 to 3,748,913
_3558
HP15_3559: HP15_3559 - endonuclease, at 3,748,915 to 3,749,784
_3559
Position (kb)
3748
3749 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3748.448 kb on - strand, within HP15_3558 at 3748.472 kb on - strand, within HP15_3558 at 3748.560 kb on + strand, within HP15_3558 at 3748.938 kb on + strand at 3748.995 kb on + strand at 3748.995 kb on + strand at 3749.039 kb on - strand, within HP15_3559 at 3749.069 kb on + strand, within HP15_3559 at 3749.237 kb on + strand, within HP15_3559 at 3749.255 kb on - strand, within HP15_3559 at 3749.292 kb on - strand, within HP15_3559 at 3749.292 kb on - strand, within HP15_3559 at 3749.294 kb on + strand, within HP15_3559 at 3749.305 kb on + strand, within HP15_3559 at 3749.392 kb on + strand, within HP15_3559 at 3749.518 kb on + strand, within HP15_3559 at 3749.518 kb on + strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.530 kb on + strand, within HP15_3559 at 3749.568 kb on - strand, within HP15_3559 at 3749.599 kb on + strand, within HP15_3559 at 3749.612 kb on - strand, within HP15_3559 at 3749.643 kb on - strand, within HP15_3559 at 3749.643 kb on - strand, within HP15_3559 at 3749.658 kb on - strand, within HP15_3559 at 3749.760 kb on + strand at 3749.760 kb on + strand at 3749.760 kb on + strand at 3749.779 kb on + strand at 3749.861 kb on + strand at 3749.861 kb on + strand at 3749.869 kb on - strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,748,448 - HP15_3558 0.43 -0.6 3,748,472 - HP15_3558 0.46 -0.4 3,748,560 + HP15_3558 0.57 -0.4 3,748,938 + +1.4 3,748,995 + -0.4 3,748,995 + +0.4 3,749,039 - HP15_3559 0.14 -0.9 3,749,069 + HP15_3559 0.18 -2.1 3,749,237 + HP15_3559 0.37 -1.9 3,749,255 - HP15_3559 0.39 +0.0 3,749,292 - HP15_3559 0.43 +0.4 3,749,292 - HP15_3559 0.43 -2.5 3,749,294 + HP15_3559 0.44 +0.5 3,749,305 + HP15_3559 0.45 +0.3 3,749,392 + HP15_3559 0.55 +0.2 3,749,518 + HP15_3559 0.69 +0.6 3,749,518 + HP15_3559 0.69 +0.6 3,749,526 - HP15_3559 0.70 -0.6 3,749,526 - HP15_3559 0.70 -1.2 3,749,526 - HP15_3559 0.70 +0.1 3,749,530 + HP15_3559 0.71 -0.3 3,749,568 - HP15_3559 0.75 +0.5 3,749,599 + HP15_3559 0.79 +0.3 3,749,612 - HP15_3559 0.80 +0.7 3,749,643 - HP15_3559 0.84 +0.2 3,749,643 - HP15_3559 0.84 -1.1 3,749,658 - HP15_3559 0.85 +1.2 3,749,760 + +1.1 3,749,760 + -0.3 3,749,760 + +0.2 3,749,779 + -0.2 3,749,861 + +0.3 3,749,861 + +0.2 3,749,869 - +0.3 3,749,882 + +0.7 3,749,882 + +0.7 3,749,882 + +0.0 3,749,882 + +0.2 3,749,882 + +0.2 3,749,890 - -1.2 3,749,890 - +3.0 3,749,890 - -1.6 3,749,890 - -0.3 3,749,890 - +0.0 3,749,890 - -1.3 3,749,890 - +0.7 3,749,895 - -0.3
Or see this region's nucleotide sequence