Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3554 and HP15_3555 are separated by 17 nucleotides HP15_3555 and HP15_3556 overlap by 17 nucleotides HP15_3556 and HP15_3557 overlap by 4 nucleotides HP15_3557 and HP15_3558 overlap by 1 nucleotides
HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750
_3554
HP15_3555: HP15_3555 - membrane lipoprotein lipid attachment site-like protein, at 3,745,768 to 3,746,409
_3555
HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637
_3556
HP15_3557: HP15_3557 - conserved hypothetical protein, secreted, at 3,747,634 to 3,748,095
_3557
HP15_3558: HP15_3558 - conserved hypothetical protein, secreted, at 3,748,095 to 3,748,913
_3558
Position (kb) 3746
3747
3748 Strain fitness (log2 ratio) -1
0
1 at 3745.676 kb on - strand at 3746.591 kb on + strand, within HP15_3556 at 3746.896 kb on - strand, within HP15_3556 at 3748.448 kb on - strand, within HP15_3558 at 3748.472 kb on - strand, within HP15_3558 at 3748.560 kb on + strand, within HP15_3558
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,745,676 - +0.3 3,746,591 + HP15_3556 0.16 -1.6 3,746,896 - HP15_3556 0.40 +0.5 3,748,448 - HP15_3558 0.43 -0.6 3,748,472 - HP15_3558 0.46 -0.4 3,748,560 + HP15_3558 0.57 -0.4
Or see this region's nucleotide sequence