Experiment: m.b. syringaldehyde 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00040 and PGA1_262p00050 are separated by 171 nucleotides PGA1_262p00050 and PGA1_262p00060 overlap by 8 nucleotides
PGA1_262p00040: PGA1_262p00040 - sulfotransferase-like protein, at 4,316 to 5,230
_262p00040
PGA1_262p00050: PGA1_262p00050 - putative glycosyl transferase, at 5,402 to 6,679
_262p00050
PGA1_262p00060: PGA1_262p00060 - putative glycosyl transferase, at 6,672 to 7,988
_262p00060
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 4.449 kb on - strand, within PGA1_262p00040 at 4.626 kb on + strand, within PGA1_262p00040 at 4.634 kb on - strand, within PGA1_262p00040 at 4.643 kb on + strand, within PGA1_262p00040 at 4.682 kb on + strand, within PGA1_262p00040 at 4.764 kb on + strand, within PGA1_262p00040 at 4.788 kb on - strand, within PGA1_262p00040 at 4.905 kb on + strand, within PGA1_262p00040 at 4.983 kb on - strand, within PGA1_262p00040 at 5.019 kb on + strand, within PGA1_262p00040 at 5.101 kb on + strand, within PGA1_262p00040 at 5.172 kb on + strand at 5.237 kb on + strand at 5.395 kb on + strand at 5.526 kb on + strand at 5.846 kb on - strand, within PGA1_262p00050 at 6.031 kb on + strand, within PGA1_262p00050 at 6.039 kb on - strand, within PGA1_262p00050 at 6.088 kb on + strand, within PGA1_262p00050 at 6.137 kb on + strand, within PGA1_262p00050 at 6.139 kb on + strand, within PGA1_262p00050 at 6.287 kb on + strand, within PGA1_262p00050 at 6.295 kb on - strand, within PGA1_262p00050 at 6.340 kb on + strand, within PGA1_262p00050 at 6.347 kb on - strand, within PGA1_262p00050 at 6.374 kb on - strand, within PGA1_262p00050 at 6.420 kb on + strand, within PGA1_262p00050 at 6.428 kb on - strand, within PGA1_262p00050 at 6.774 kb on + strand at 6.972 kb on - strand, within PGA1_262p00060 at 6.979 kb on + strand, within PGA1_262p00060 at 6.993 kb on - strand, within PGA1_262p00060 at 7.096 kb on + strand, within PGA1_262p00060 at 7.263 kb on - strand, within PGA1_262p00060 at 7.297 kb on - strand, within PGA1_262p00060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM remove 4,449 - PGA1_262p00040 0.15 +0.6 4,626 + PGA1_262p00040 0.34 +0.4 4,634 - PGA1_262p00040 0.35 -0.2 4,643 + PGA1_262p00040 0.36 +0.5 4,682 + PGA1_262p00040 0.40 -0.5 4,764 + PGA1_262p00040 0.49 -0.1 4,788 - PGA1_262p00040 0.52 +1.0 4,905 + PGA1_262p00040 0.64 -0.8 4,983 - PGA1_262p00040 0.73 +0.2 5,019 + PGA1_262p00040 0.77 -2.1 5,101 + PGA1_262p00040 0.86 -0.4 5,172 + -2.6 5,237 + -0.4 5,395 + +0.8 5,526 + -0.2 5,846 - PGA1_262p00050 0.35 -1.2 6,031 + PGA1_262p00050 0.49 -0.6 6,039 - PGA1_262p00050 0.50 +0.5 6,088 + PGA1_262p00050 0.54 +1.2 6,137 + PGA1_262p00050 0.58 -0.2 6,139 + PGA1_262p00050 0.58 +0.1 6,287 + PGA1_262p00050 0.69 -0.8 6,295 - PGA1_262p00050 0.70 -1.4 6,340 + PGA1_262p00050 0.73 -1.5 6,347 - PGA1_262p00050 0.74 -1.3 6,374 - PGA1_262p00050 0.76 +0.5 6,420 + PGA1_262p00050 0.80 -0.9 6,428 - PGA1_262p00050 0.80 -0.9 6,774 + -1.0 6,972 - PGA1_262p00060 0.23 -1.9 6,979 + PGA1_262p00060 0.23 -1.9 6,993 - PGA1_262p00060 0.24 -0.2 7,096 + PGA1_262p00060 0.32 -0.6 7,263 - PGA1_262p00060 0.45 +1.1 7,297 - PGA1_262p00060 0.47 -0.5
Or see this region's nucleotide sequence