Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00030

Experiment: m.b. syringaldehyde 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00020 and PGA1_262p00030 are separated by 438 nucleotidesPGA1_262p00030 and PGA1_262p00040 are separated by 34 nucleotides PGA1_262p00020: PGA1_262p00020 - plamid partition protein-like protein, at 1,402 to 2,544 _262p00020 PGA1_262p00030: PGA1_262p00030 - Glycosyl hydrolases family 16./Hemolysin-type calcium-binding repeat (2 copies)., at 2,983 to 4,281 _262p00030 PGA1_262p00040: PGA1_262p00040 - sulfotransferase-like protein, at 4,316 to 5,230 _262p00040 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.652 kb on - strandat 2.806 kb on - strandat 2.843 kb on - strandat 2.845 kb on + strandat 2.853 kb on - strandat 2.853 kb on - strandat 2.857 kb on + strandat 2.857 kb on + strandat 2.857 kb on + strandat 2.934 kb on + strandat 2.935 kb on - strandat 2.942 kb on - strandat 2.942 kb on - strandat 2.974 kb on - strandat 2.974 kb on - strandat 2.974 kb on - strandat 3.031 kb on - strandat 3.127 kb on + strand, within PGA1_262p00030at 3.237 kb on - strand, within PGA1_262p00030at 3.361 kb on + strand, within PGA1_262p00030at 3.609 kb on - strand, within PGA1_262p00030at 3.618 kb on + strand, within PGA1_262p00030at 3.659 kb on + strand, within PGA1_262p00030at 3.802 kb on + strand, within PGA1_262p00030at 4.082 kb on - strand, within PGA1_262p00030at 4.232 kb on - strandat 4.234 kb on - strandat 4.387 kb on + strandat 4.449 kb on - strand, within PGA1_262p00040at 4.626 kb on + strand, within PGA1_262p00040at 4.634 kb on - strand, within PGA1_262p00040at 4.643 kb on + strand, within PGA1_262p00040at 4.682 kb on + strand, within PGA1_262p00040at 4.764 kb on + strand, within PGA1_262p00040at 4.788 kb on - strand, within PGA1_262p00040at 4.905 kb on + strand, within PGA1_262p00040at 4.983 kb on - strand, within PGA1_262p00040at 5.019 kb on + strand, within PGA1_262p00040at 5.101 kb on + strand, within PGA1_262p00040at 5.172 kb on + strandat 5.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM
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2,652 - -0.2
2,806 - +0.7
2,843 - -0.4
2,845 + -0.4
2,853 - -1.8
2,853 - -0.2
2,857 + +1.4
2,857 + +0.3
2,857 + -0.3
2,934 + +0.1
2,935 - +1.1
2,942 - -0.1
2,942 - +0.8
2,974 - -2.7
2,974 - +0.5
2,974 - +0.1
3,031 - -0.6
3,127 + PGA1_262p00030 0.11 -0.8
3,237 - PGA1_262p00030 0.20 -0.3
3,361 + PGA1_262p00030 0.29 -0.8
3,609 - PGA1_262p00030 0.48 +0.2
3,618 + PGA1_262p00030 0.49 +0.4
3,659 + PGA1_262p00030 0.52 -0.8
3,802 + PGA1_262p00030 0.63 +0.2
4,082 - PGA1_262p00030 0.85 -2.0
4,232 - +2.0
4,234 - +0.5
4,387 + -1.5
4,449 - PGA1_262p00040 0.15 +0.6
4,626 + PGA1_262p00040 0.34 +0.4
4,634 - PGA1_262p00040 0.35 -0.2
4,643 + PGA1_262p00040 0.36 +0.5
4,682 + PGA1_262p00040 0.40 -0.5
4,764 + PGA1_262p00040 0.49 -0.1
4,788 - PGA1_262p00040 0.52 +1.0
4,905 + PGA1_262p00040 0.64 -0.8
4,983 - PGA1_262p00040 0.73 +0.2
5,019 + PGA1_262p00040 0.77 -2.1
5,101 + PGA1_262p00040 0.86 -0.4
5,172 + -2.6
5,237 + -0.4

Or see this region's nucleotide sequence