Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3533 and HP15_3534 are separated by 50 nucleotides HP15_3534 and HP15_3535 are separated by 185 nucleotides HP15_3535 and HP15_3536 are separated by 232 nucleotides
HP15_3533: HP15_3533 - response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 3,719,617 to 3,721,842
_3533
HP15_3534: HP15_3534 - conserved hypothetical protein, membrane, at 3,721,893 to 3,722,204
_3534
HP15_3535: HP15_3535 - hypothetical protein, at 3,722,390 to 3,722,674
_3535
HP15_3536: HP15_3536 - hypothetical protein, at 3,722,907 to 3,723,029
_3536
Position (kb)
3721
3722
3723 Strain fitness (log2 ratio)
-1
0
1 at 3720.916 kb on + strand, within HP15_3533 at 3720.943 kb on + strand, within HP15_3533 at 3720.972 kb on - strand, within HP15_3533 at 3720.979 kb on + strand, within HP15_3533 at 3721.005 kb on + strand, within HP15_3533 at 3721.005 kb on + strand, within HP15_3533 at 3721.056 kb on - strand, within HP15_3533 at 3721.088 kb on + strand, within HP15_3533 at 3721.150 kb on - strand, within HP15_3533 at 3721.163 kb on + strand, within HP15_3533 at 3721.193 kb on - strand, within HP15_3533 at 3721.305 kb on - strand, within HP15_3533 at 3721.309 kb on - strand, within HP15_3533 at 3721.415 kb on + strand, within HP15_3533 at 3721.415 kb on + strand, within HP15_3533 at 3721.423 kb on - strand, within HP15_3533 at 3721.500 kb on - strand, within HP15_3533 at 3721.577 kb on - strand, within HP15_3533 at 3721.617 kb on - strand, within HP15_3533 at 3721.685 kb on - strand at 3721.890 kb on - strand at 3722.163 kb on - strand, within HP15_3534 at 3722.320 kb on - strand at 3722.325 kb on + strand at 3722.325 kb on + strand at 3722.428 kb on + strand, within HP15_3535 at 3722.457 kb on + strand, within HP15_3535 at 3722.590 kb on + strand, within HP15_3535 at 3722.632 kb on - strand, within HP15_3535 at 3722.760 kb on - strand at 3722.768 kb on - strand at 3722.828 kb on - strand at 3722.899 kb on + strand at 3722.913 kb on + strand at 3722.988 kb on + strand, within HP15_3536 at 3723.024 kb on + strand at 3723.034 kb on + strand at 3723.137 kb on + strand at 3723.169 kb on + strand at 3723.174 kb on + strand at 3723.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,720,916 + HP15_3533 0.58 -0.1 3,720,943 + HP15_3533 0.60 -0.6 3,720,972 - HP15_3533 0.61 -0.7 3,720,979 + HP15_3533 0.61 +1.2 3,721,005 + HP15_3533 0.62 -0.8 3,721,005 + HP15_3533 0.62 +0.2 3,721,056 - HP15_3533 0.65 -0.0 3,721,088 + HP15_3533 0.66 -0.2 3,721,150 - HP15_3533 0.69 +0.2 3,721,163 + HP15_3533 0.69 +1.3 3,721,193 - HP15_3533 0.71 -0.5 3,721,305 - HP15_3533 0.76 -0.0 3,721,309 - HP15_3533 0.76 +0.3 3,721,415 + HP15_3533 0.81 +0.1 3,721,415 + HP15_3533 0.81 +0.8 3,721,423 - HP15_3533 0.81 +0.4 3,721,500 - HP15_3533 0.85 -0.7 3,721,577 - HP15_3533 0.88 +0.5 3,721,617 - HP15_3533 0.90 +1.5 3,721,685 - +0.6 3,721,890 - -0.0 3,722,163 - HP15_3534 0.87 -1.1 3,722,320 - +1.1 3,722,325 + -0.1 3,722,325 + -1.0 3,722,428 + HP15_3535 0.13 -0.2 3,722,457 + HP15_3535 0.24 -0.6 3,722,590 + HP15_3535 0.70 -0.5 3,722,632 - HP15_3535 0.85 +0.3 3,722,760 - -0.1 3,722,768 - -0.6 3,722,828 - -0.8 3,722,899 + +0.1 3,722,913 + -0.1 3,722,988 + HP15_3536 0.66 +0.1 3,723,024 + +0.7 3,723,034 + -0.2 3,723,137 + +0.4 3,723,169 + +0.2 3,723,174 + -0.3 3,723,188 - -0.1
Or see this region's nucleotide sequence