Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3389 and HP15_3390 are separated by 194 nucleotides HP15_3390 and HP15_3391 are separated by 12 nucleotides
HP15_3389: HP15_3389 - phosphate ABC transporter periplasmic binding protein, at 3,557,865 to 3,558,908
_3389
HP15_3390: HP15_3390 - thioesterase superfamily protein, at 3,559,103 to 3,559,507
_3390
HP15_3391: HP15_3391 - dihydroorotate dehydrogenase 2, at 3,559,520 to 3,560,512
_3391
HP15_3392: HP15_3392 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, at 3,560,505 to 3,564,104
_3392
Position (kb)
3559
3560 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3559.045 kb on + strand at 3559.177 kb on + strand, within HP15_3390 at 3559.177 kb on + strand, within HP15_3390 at 3559.177 kb on + strand, within HP15_3390 at 3559.234 kb on - strand, within HP15_3390 at 3559.248 kb on - strand, within HP15_3390 at 3559.398 kb on + strand, within HP15_3390 at 3559.398 kb on + strand, within HP15_3390 at 3559.398 kb on + strand, within HP15_3390 at 3559.406 kb on - strand, within HP15_3390 at 3559.518 kb on + strand at 3559.522 kb on + strand at 3559.640 kb on + strand, within HP15_3391 at 3559.694 kb on - strand, within HP15_3391 at 3559.701 kb on + strand, within HP15_3391 at 3559.701 kb on + strand, within HP15_3391 at 3559.717 kb on - strand, within HP15_3391 at 3559.717 kb on - strand, within HP15_3391 at 3559.810 kb on - strand, within HP15_3391 at 3559.818 kb on - strand, within HP15_3391 at 3559.927 kb on - strand, within HP15_3391 at 3559.996 kb on + strand, within HP15_3391 at 3559.996 kb on + strand, within HP15_3391 at 3560.004 kb on - strand, within HP15_3391 at 3560.004 kb on - strand, within HP15_3391 at 3560.036 kb on + strand, within HP15_3391 at 3560.189 kb on - strand, within HP15_3391 at 3560.227 kb on + strand, within HP15_3391 at 3560.235 kb on - strand, within HP15_3391 at 3560.345 kb on - strand, within HP15_3391 at 3560.389 kb on - strand, within HP15_3391 at 3560.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,559,045 + -0.4 3,559,177 + HP15_3390 0.18 -0.5 3,559,177 + HP15_3390 0.18 -0.8 3,559,177 + HP15_3390 0.18 -2.0 3,559,234 - HP15_3390 0.32 -1.1 3,559,248 - HP15_3390 0.36 -1.3 3,559,398 + HP15_3390 0.73 -1.5 3,559,398 + HP15_3390 0.73 -1.0 3,559,398 + HP15_3390 0.73 +0.6 3,559,406 - HP15_3390 0.75 +0.4 3,559,518 + -0.7 3,559,522 + +0.2 3,559,640 + HP15_3391 0.12 +0.9 3,559,694 - HP15_3391 0.18 +0.3 3,559,701 + HP15_3391 0.18 +0.2 3,559,701 + HP15_3391 0.18 -1.1 3,559,717 - HP15_3391 0.20 +0.3 3,559,717 - HP15_3391 0.20 +0.2 3,559,810 - HP15_3391 0.29 -3.2 3,559,818 - HP15_3391 0.30 +0.2 3,559,927 - HP15_3391 0.41 -0.7 3,559,996 + HP15_3391 0.48 -0.4 3,559,996 + HP15_3391 0.48 +0.1 3,560,004 - HP15_3391 0.49 +0.1 3,560,004 - HP15_3391 0.49 -0.8 3,560,036 + HP15_3391 0.52 +0.3 3,560,189 - HP15_3391 0.67 +0.5 3,560,227 + HP15_3391 0.71 -0.2 3,560,235 - HP15_3391 0.72 -0.7 3,560,345 - HP15_3391 0.83 -0.0 3,560,389 - HP15_3391 0.88 +0.3 3,560,439 - -1.7
Or see this region's nucleotide sequence