Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3183 and HP15_3184 are separated by 75 nucleotides HP15_3184 and HP15_3185 overlap by 23 nucleotides
HP15_3183: HP15_3183 - two component transcriptional regulator, LuxR family, at 3,336,609 to 3,337,382
_3183
HP15_3184: HP15_3184 - two-component system sensor protein, at 3,337,458 to 3,339,719
_3184
HP15_3185: HP15_3185 - conserved hypothetical protein containing DUF1745, at 3,339,697 to 3,340,680
_3185
Position (kb)
3337
3338
3339
3340 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3336.464 kb on - strand at 3336.464 kb on - strand at 3336.824 kb on - strand, within HP15_3183 at 3336.864 kb on - strand, within HP15_3183 at 3336.900 kb on + strand, within HP15_3183 at 3336.931 kb on - strand, within HP15_3183 at 3337.039 kb on + strand, within HP15_3183 at 3337.049 kb on - strand, within HP15_3183 at 3337.049 kb on - strand, within HP15_3183 at 3337.129 kb on - strand, within HP15_3183 at 3337.162 kb on + strand, within HP15_3183 at 3337.180 kb on - strand, within HP15_3183 at 3337.299 kb on - strand, within HP15_3183 at 3337.306 kb on + strand at 3337.314 kb on - strand at 3337.386 kb on + strand at 3337.486 kb on + strand at 3337.537 kb on - strand at 3337.568 kb on + strand at 3337.600 kb on + strand at 3337.620 kb on - strand at 3337.653 kb on + strand at 3337.679 kb on + strand at 3337.777 kb on - strand, within HP15_3184 at 3337.815 kb on + strand, within HP15_3184 at 3337.818 kb on - strand, within HP15_3184 at 3337.827 kb on + strand, within HP15_3184 at 3337.925 kb on - strand, within HP15_3184 at 3338.226 kb on + strand, within HP15_3184 at 3338.307 kb on + strand, within HP15_3184 at 3338.507 kb on - strand, within HP15_3184 at 3338.563 kb on - strand, within HP15_3184 at 3338.649 kb on + strand, within HP15_3184 at 3338.649 kb on + strand, within HP15_3184 at 3338.657 kb on - strand, within HP15_3184 at 3338.712 kb on - strand, within HP15_3184 at 3338.737 kb on - strand, within HP15_3184 at 3338.775 kb on - strand, within HP15_3184 at 3338.813 kb on + strand, within HP15_3184 at 3338.818 kb on + strand, within HP15_3184 at 3338.840 kb on + strand, within HP15_3184 at 3338.866 kb on - strand, within HP15_3184 at 3338.976 kb on - strand, within HP15_3184 at 3338.976 kb on - strand, within HP15_3184 at 3338.985 kb on - strand, within HP15_3184 at 3339.119 kb on - strand, within HP15_3184 at 3339.297 kb on + strand, within HP15_3184 at 3339.306 kb on - strand, within HP15_3184 at 3339.320 kb on - strand, within HP15_3184 at 3339.362 kb on - strand, within HP15_3184 at 3339.423 kb on - strand, within HP15_3184 at 3339.456 kb on + strand, within HP15_3184 at 3339.470 kb on - strand, within HP15_3184 at 3339.470 kb on - strand, within HP15_3184 at 3339.470 kb on - strand, within HP15_3184 at 3339.481 kb on + strand, within HP15_3184 at 3339.489 kb on - strand, within HP15_3184 at 3339.671 kb on + strand at 3339.689 kb on - strand at 3339.833 kb on + strand, within HP15_3185 at 3339.866 kb on - strand, within HP15_3185 at 3339.895 kb on + strand, within HP15_3185 at 3340.116 kb on - strand, within HP15_3185 at 3340.141 kb on + strand, within HP15_3185 at 3340.190 kb on - strand, within HP15_3185 at 3340.190 kb on - strand, within HP15_3185 at 3340.190 kb on - strand, within HP15_3185 at 3340.226 kb on - strand, within HP15_3185 at 3340.235 kb on + strand, within HP15_3185 at 3340.235 kb on + strand, within HP15_3185 at 3340.274 kb on + strand, within HP15_3185 at 3340.274 kb on + strand, within HP15_3185 at 3340.304 kb on + strand, within HP15_3185 at 3340.334 kb on + strand, within HP15_3185 at 3340.400 kb on - strand, within HP15_3185 at 3340.427 kb on + strand, within HP15_3185 at 3340.462 kb on + strand, within HP15_3185 at 3340.502 kb on + strand, within HP15_3185 at 3340.550 kb on - strand, within HP15_3185 at 3340.597 kb on + strand at 3340.682 kb on + strand at 3340.691 kb on - strand at 3340.706 kb on + strand at 3340.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,336,464 - -1.3 3,336,464 - -1.4 3,336,824 - HP15_3183 0.28 -0.1 3,336,864 - HP15_3183 0.33 +0.2 3,336,900 + HP15_3183 0.38 +0.7 3,336,931 - HP15_3183 0.42 -0.1 3,337,039 + HP15_3183 0.56 +0.4 3,337,049 - HP15_3183 0.57 -0.2 3,337,049 - HP15_3183 0.57 +0.3 3,337,129 - HP15_3183 0.67 -1.1 3,337,162 + HP15_3183 0.71 +0.4 3,337,180 - HP15_3183 0.74 +1.2 3,337,299 - HP15_3183 0.89 -0.2 3,337,306 + -0.2 3,337,314 - +0.1 3,337,386 + +0.8 3,337,486 + -0.8 3,337,537 - -0.7 3,337,568 + -0.9 3,337,600 + -0.4 3,337,620 - -0.3 3,337,653 + -0.0 3,337,679 + +0.0 3,337,777 - HP15_3184 0.14 -0.3 3,337,815 + HP15_3184 0.16 -0.2 3,337,818 - HP15_3184 0.16 +0.0 3,337,827 + HP15_3184 0.16 -0.7 3,337,925 - HP15_3184 0.21 -0.4 3,338,226 + HP15_3184 0.34 +0.3 3,338,307 + HP15_3184 0.38 +0.6 3,338,507 - HP15_3184 0.46 -2.4 3,338,563 - HP15_3184 0.49 -0.1 3,338,649 + HP15_3184 0.53 -0.5 3,338,649 + HP15_3184 0.53 -0.8 3,338,657 - HP15_3184 0.53 -0.6 3,338,712 - HP15_3184 0.55 -0.5 3,338,737 - HP15_3184 0.57 -0.8 3,338,775 - HP15_3184 0.58 -1.4 3,338,813 + HP15_3184 0.60 -0.8 3,338,818 + HP15_3184 0.60 -0.2 3,338,840 + HP15_3184 0.61 -0.3 3,338,866 - HP15_3184 0.62 +0.0 3,338,976 - HP15_3184 0.67 +1.8 3,338,976 - HP15_3184 0.67 -0.4 3,338,985 - HP15_3184 0.68 -0.6 3,339,119 - HP15_3184 0.73 -0.5 3,339,297 + HP15_3184 0.81 -0.3 3,339,306 - HP15_3184 0.82 -0.7 3,339,320 - HP15_3184 0.82 -0.1 3,339,362 - HP15_3184 0.84 +0.9 3,339,423 - HP15_3184 0.87 +0.2 3,339,456 + HP15_3184 0.88 -0.5 3,339,470 - HP15_3184 0.89 +0.0 3,339,470 - HP15_3184 0.89 -0.4 3,339,470 - HP15_3184 0.89 -0.3 3,339,481 + HP15_3184 0.89 -0.8 3,339,489 - HP15_3184 0.90 -0.7 3,339,671 + -0.9 3,339,689 - +1.2 3,339,833 + HP15_3185 0.14 -0.7 3,339,866 - HP15_3185 0.17 -0.6 3,339,895 + HP15_3185 0.20 -0.1 3,340,116 - HP15_3185 0.43 -0.2 3,340,141 + HP15_3185 0.45 -0.2 3,340,190 - HP15_3185 0.50 +0.4 3,340,190 - HP15_3185 0.50 -0.4 3,340,190 - HP15_3185 0.50 -0.7 3,340,226 - HP15_3185 0.54 +0.6 3,340,235 + HP15_3185 0.55 -1.6 3,340,235 + HP15_3185 0.55 +0.4 3,340,274 + HP15_3185 0.59 -1.1 3,340,274 + HP15_3185 0.59 -0.9 3,340,304 + HP15_3185 0.62 -0.5 3,340,334 + HP15_3185 0.65 +0.3 3,340,400 - HP15_3185 0.71 -0.7 3,340,427 + HP15_3185 0.74 -0.1 3,340,462 + HP15_3185 0.78 -0.4 3,340,502 + HP15_3185 0.82 -0.1 3,340,550 - HP15_3185 0.87 +1.1 3,340,597 + -0.9 3,340,682 + -0.9 3,340,691 - -0.4 3,340,706 + -0.7 3,340,714 - +0.1
Or see this region's nucleotide sequence