Experiment: m.b. syringaldehyde 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03090 and PGA1_c03100 are separated by 5 nucleotides PGA1_c03100 and PGA1_c03110 are separated by 33 nucleotides PGA1_c03110 and PGA1_c03120 are separated by 32 nucleotides
PGA1_c03090: PGA1_c03090 - putative secretion protein, at 295,424 to 296,914
_c03090
PGA1_c03100: PGA1_c03100 - putative aminoglycoside efflux pump, at 296,920 to 300,315
_c03100
PGA1_c03110: PGA1_c03110 - NUDIX hydrolase, at 300,349 to 300,858
_c03110
PGA1_c03120: PGA1_c03120 - hypothetical protein, at 300,891 to 301,745
_c03120
Position (kb) 296
297
298
299
300
301 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 295.943 kb on - strand, within PGA1_c03090 at 295.987 kb on - strand, within PGA1_c03090 at 296.010 kb on + strand, within PGA1_c03090 at 296.020 kb on + strand, within PGA1_c03090 at 296.083 kb on + strand, within PGA1_c03090 at 296.083 kb on + strand, within PGA1_c03090 at 296.113 kb on + strand, within PGA1_c03090 at 296.121 kb on + strand, within PGA1_c03090 at 296.181 kb on - strand, within PGA1_c03090 at 296.230 kb on - strand, within PGA1_c03090 at 296.271 kb on + strand, within PGA1_c03090 at 296.279 kb on - strand, within PGA1_c03090 at 296.372 kb on + strand, within PGA1_c03090 at 296.473 kb on - strand, within PGA1_c03090 at 296.516 kb on - strand, within PGA1_c03090 at 296.610 kb on - strand, within PGA1_c03090 at 296.612 kb on + strand, within PGA1_c03090 at 296.613 kb on + strand, within PGA1_c03090 at 296.620 kb on - strand, within PGA1_c03090 at 296.620 kb on - strand, within PGA1_c03090 at 296.638 kb on - strand, within PGA1_c03090 at 296.646 kb on + strand, within PGA1_c03090 at 296.646 kb on + strand, within PGA1_c03090 at 296.654 kb on - strand, within PGA1_c03090 at 296.691 kb on + strand, within PGA1_c03090 at 296.691 kb on + strand, within PGA1_c03090 at 296.691 kb on + strand, within PGA1_c03090 at 296.691 kb on + strand, within PGA1_c03090 at 296.923 kb on - strand at 296.923 kb on - strand at 297.118 kb on + strand at 297.118 kb on - strand at 297.118 kb on - strand at 297.188 kb on + strand at 297.196 kb on - strand at 297.232 kb on + strand at 297.327 kb on + strand, within PGA1_c03100 at 297.392 kb on + strand, within PGA1_c03100 at 297.392 kb on + strand, within PGA1_c03100 at 297.428 kb on + strand, within PGA1_c03100 at 297.585 kb on + strand, within PGA1_c03100 at 297.632 kb on + strand, within PGA1_c03100 at 297.682 kb on + strand, within PGA1_c03100 at 297.685 kb on - strand, within PGA1_c03100 at 297.685 kb on - strand, within PGA1_c03100 at 297.691 kb on + strand, within PGA1_c03100 at 297.790 kb on + strand, within PGA1_c03100 at 297.798 kb on - strand, within PGA1_c03100 at 297.830 kb on - strand, within PGA1_c03100 at 297.834 kb on + strand, within PGA1_c03100 at 297.877 kb on + strand, within PGA1_c03100 at 297.890 kb on - strand, within PGA1_c03100 at 297.937 kb on + strand, within PGA1_c03100 at 297.961 kb on - strand, within PGA1_c03100 at 298.101 kb on - strand, within PGA1_c03100 at 298.106 kb on + strand, within PGA1_c03100 at 298.272 kb on + strand, within PGA1_c03100 at 298.395 kb on + strand, within PGA1_c03100 at 298.411 kb on - strand, within PGA1_c03100 at 298.411 kb on - strand, within PGA1_c03100 at 298.413 kb on + strand, within PGA1_c03100 at 298.418 kb on + strand, within PGA1_c03100 at 298.418 kb on + strand, within PGA1_c03100 at 298.458 kb on - strand, within PGA1_c03100 at 298.462 kb on + strand, within PGA1_c03100 at 298.517 kb on - strand, within PGA1_c03100 at 298.522 kb on - strand, within PGA1_c03100 at 298.561 kb on - strand, within PGA1_c03100 at 298.713 kb on + strand, within PGA1_c03100 at 298.737 kb on + strand, within PGA1_c03100 at 298.786 kb on + strand, within PGA1_c03100 at 298.791 kb on + strand, within PGA1_c03100 at 298.799 kb on - strand, within PGA1_c03100 at 298.881 kb on - strand, within PGA1_c03100 at 298.902 kb on - strand, within PGA1_c03100 at 298.981 kb on - strand, within PGA1_c03100 at 298.986 kb on + strand, within PGA1_c03100 at 298.986 kb on + strand, within PGA1_c03100 at 299.018 kb on - strand, within PGA1_c03100 at 299.018 kb on - strand, within PGA1_c03100 at 299.044 kb on + strand, within PGA1_c03100 at 299.044 kb on + strand, within PGA1_c03100 at 299.054 kb on + strand, within PGA1_c03100 at 299.054 kb on + strand, within PGA1_c03100 at 299.054 kb on + strand, within PGA1_c03100 at 299.054 kb on + strand, within PGA1_c03100 at 299.054 kb on + strand, within PGA1_c03100 at 299.062 kb on - strand, within PGA1_c03100 at 299.062 kb on - strand, within PGA1_c03100 at 299.062 kb on - strand, within PGA1_c03100 at 299.197 kb on - strand, within PGA1_c03100 at 299.289 kb on + strand, within PGA1_c03100 at 299.305 kb on - strand, within PGA1_c03100 at 299.311 kb on + strand, within PGA1_c03100 at 299.419 kb on - strand, within PGA1_c03100 at 299.516 kb on + strand, within PGA1_c03100 at 299.595 kb on - strand, within PGA1_c03100 at 299.623 kb on - strand, within PGA1_c03100 at 299.627 kb on + strand, within PGA1_c03100 at 299.678 kb on - strand, within PGA1_c03100 at 299.693 kb on - strand, within PGA1_c03100 at 299.886 kb on + strand, within PGA1_c03100 at 299.895 kb on + strand, within PGA1_c03100 at 299.949 kb on + strand, within PGA1_c03100 at 299.957 kb on - strand, within PGA1_c03100 at 300.019 kb on + strand at 300.019 kb on + strand at 300.089 kb on + strand at 300.205 kb on + strand at 300.215 kb on + strand at 300.319 kb on + strand at 300.425 kb on - strand, within PGA1_c03110 at 300.430 kb on - strand, within PGA1_c03110 at 300.539 kb on + strand, within PGA1_c03110 at 300.612 kb on + strand, within PGA1_c03110 at 300.620 kb on - strand, within PGA1_c03110 at 300.669 kb on - strand, within PGA1_c03110 at 300.707 kb on - strand, within PGA1_c03110 at 300.713 kb on + strand, within PGA1_c03110 at 300.743 kb on - strand, within PGA1_c03110 at 300.859 kb on + strand at 300.864 kb on + strand at 300.906 kb on + strand at 300.906 kb on + strand at 300.976 kb on + strand at 300.976 kb on + strand at 300.984 kb on - strand, within PGA1_c03120 at 301.036 kb on + strand, within PGA1_c03120 at 301.110 kb on - strand, within PGA1_c03120 at 301.172 kb on - strand, within PGA1_c03120 at 301.274 kb on + strand, within PGA1_c03120 at 301.282 kb on + strand, within PGA1_c03120 at 301.282 kb on - strand, within PGA1_c03120 at 301.302 kb on - strand, within PGA1_c03120
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM remove 295,943 - PGA1_c03090 0.35 -1.4 295,987 - PGA1_c03090 0.38 -0.7 296,010 + PGA1_c03090 0.39 -1.0 296,020 + PGA1_c03090 0.40 -0.4 296,083 + PGA1_c03090 0.44 -0.9 296,083 + PGA1_c03090 0.44 -0.2 296,113 + PGA1_c03090 0.46 -0.6 296,121 + PGA1_c03090 0.47 -0.2 296,181 - PGA1_c03090 0.51 -0.1 296,230 - PGA1_c03090 0.54 -1.7 296,271 + PGA1_c03090 0.57 -0.4 296,279 - PGA1_c03090 0.57 -1.4 296,372 + PGA1_c03090 0.64 -0.7 296,473 - PGA1_c03090 0.70 -1.9 296,516 - PGA1_c03090 0.73 -1.2 296,610 - PGA1_c03090 0.80 -1.5 296,612 + PGA1_c03090 0.80 -0.6 296,613 + PGA1_c03090 0.80 -0.4 296,620 - PGA1_c03090 0.80 -1.5 296,620 - PGA1_c03090 0.80 -2.5 296,638 - PGA1_c03090 0.81 +0.5 296,646 + PGA1_c03090 0.82 -0.8 296,646 + PGA1_c03090 0.82 +0.5 296,654 - PGA1_c03090 0.82 -1.5 296,691 + PGA1_c03090 0.85 -0.0 296,691 + PGA1_c03090 0.85 -0.6 296,691 + PGA1_c03090 0.85 +0.1 296,691 + PGA1_c03090 0.85 -0.3 296,923 - -1.5 296,923 - -0.5 297,118 + -1.2 297,118 - -0.5 297,118 - -1.4 297,188 + -2.2 297,196 - -2.2 297,232 + -1.4 297,327 + PGA1_c03100 0.12 -1.1 297,392 + PGA1_c03100 0.14 +0.6 297,392 + PGA1_c03100 0.14 +0.1 297,428 + PGA1_c03100 0.15 +1.1 297,585 + PGA1_c03100 0.20 -0.5 297,632 + PGA1_c03100 0.21 +0.2 297,682 + PGA1_c03100 0.22 -0.9 297,685 - PGA1_c03100 0.23 +0.1 297,685 - PGA1_c03100 0.23 -2.4 297,691 + PGA1_c03100 0.23 -1.9 297,790 + PGA1_c03100 0.26 +0.5 297,798 - PGA1_c03100 0.26 -0.1 297,830 - PGA1_c03100 0.27 -2.1 297,834 + PGA1_c03100 0.27 -0.0 297,877 + PGA1_c03100 0.28 -0.2 297,890 - PGA1_c03100 0.29 +0.3 297,937 + PGA1_c03100 0.30 +0.7 297,961 - PGA1_c03100 0.31 -0.7 298,101 - PGA1_c03100 0.35 +0.3 298,106 + PGA1_c03100 0.35 -1.4 298,272 + PGA1_c03100 0.40 -2.0 298,395 + PGA1_c03100 0.43 -0.1 298,411 - PGA1_c03100 0.44 +0.8 298,411 - PGA1_c03100 0.44 -1.1 298,413 + PGA1_c03100 0.44 -1.5 298,418 + PGA1_c03100 0.44 -0.4 298,418 + PGA1_c03100 0.44 +1.7 298,458 - PGA1_c03100 0.45 +0.6 298,462 + PGA1_c03100 0.45 -0.9 298,517 - PGA1_c03100 0.47 -0.6 298,522 - PGA1_c03100 0.47 -0.3 298,561 - PGA1_c03100 0.48 -2.1 298,713 + PGA1_c03100 0.53 +0.3 298,737 + PGA1_c03100 0.54 -0.7 298,786 + PGA1_c03100 0.55 -1.4 298,791 + PGA1_c03100 0.55 +0.2 298,799 - PGA1_c03100 0.55 -1.6 298,881 - PGA1_c03100 0.58 -2.2 298,902 - PGA1_c03100 0.58 -0.7 298,981 - PGA1_c03100 0.61 -0.1 298,986 + PGA1_c03100 0.61 -0.2 298,986 + PGA1_c03100 0.61 +0.5 299,018 - PGA1_c03100 0.62 +0.2 299,018 - PGA1_c03100 0.62 +1.1 299,044 + PGA1_c03100 0.63 -0.9 299,044 + PGA1_c03100 0.63 -1.4 299,054 + PGA1_c03100 0.63 -1.0 299,054 + PGA1_c03100 0.63 -0.8 299,054 + PGA1_c03100 0.63 -2.1 299,054 + PGA1_c03100 0.63 -0.1 299,054 + PGA1_c03100 0.63 -0.6 299,062 - PGA1_c03100 0.63 +0.2 299,062 - PGA1_c03100 0.63 -1.0 299,062 - PGA1_c03100 0.63 -0.9 299,197 - PGA1_c03100 0.67 -0.3 299,289 + PGA1_c03100 0.70 -0.8 299,305 - PGA1_c03100 0.70 -0.2 299,311 + PGA1_c03100 0.70 -0.7 299,419 - PGA1_c03100 0.74 -1.5 299,516 + PGA1_c03100 0.76 -0.3 299,595 - PGA1_c03100 0.79 +0.6 299,623 - PGA1_c03100 0.80 -0.8 299,627 + PGA1_c03100 0.80 +0.1 299,678 - PGA1_c03100 0.81 -0.2 299,693 - PGA1_c03100 0.82 -1.7 299,886 + PGA1_c03100 0.87 -1.9 299,895 + PGA1_c03100 0.88 -0.1 299,949 + PGA1_c03100 0.89 +1.3 299,957 - PGA1_c03100 0.89 +0.1 300,019 + -0.5 300,019 + -0.3 300,089 + -1.7 300,205 + -1.5 300,215 + +0.1 300,319 + -0.3 300,425 - PGA1_c03110 0.15 +0.8 300,430 - PGA1_c03110 0.16 +0.1 300,539 + PGA1_c03110 0.37 -0.2 300,612 + PGA1_c03110 0.52 +0.0 300,620 - PGA1_c03110 0.53 -0.8 300,669 - PGA1_c03110 0.63 +0.4 300,707 - PGA1_c03110 0.70 +0.5 300,713 + PGA1_c03110 0.71 +0.8 300,743 - PGA1_c03110 0.77 -1.7 300,859 + -0.3 300,864 + -0.1 300,906 + -0.9 300,906 + +0.5 300,976 + +0.7 300,976 + -3.9 300,984 - PGA1_c03120 0.11 -2.2 301,036 + PGA1_c03120 0.17 -1.1 301,110 - PGA1_c03120 0.26 -1.7 301,172 - PGA1_c03120 0.33 +0.6 301,274 + PGA1_c03120 0.45 -1.1 301,282 + PGA1_c03120 0.46 -0.7 301,282 - PGA1_c03120 0.46 -0.7 301,302 - PGA1_c03120 0.48 -2.7
Or see this region's nucleotide sequence