Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2920 and HP15_2921 are separated by 68 nucleotides HP15_2921 and HP15_2922 are separated by 62 nucleotides HP15_2922 and HP15_2923 are separated by 590 nucleotides HP15_2923 and HP15_2924 are separated by 259 nucleotides
HP15_2920: HP15_2920 - amino acid ABC transporter, ATP-binding protein, at 3,059,393 to 3,060,139
_2920
HP15_2921: HP15_2921 - prophage CP4-57 regulatory, at 3,060,208 to 3,060,630
_2921
HP15_2922: HP15_2922 - hypothetical protein, at 3,060,693 to 3,060,977
_2922
HP15_2923: HP15_2923 - hypothetical protein, at 3,061,568 to 3,061,693
_2923
HP15_2924: HP15_2924 - conserved hypothetical protein, at 3,061,953 to 3,063,536
_2924
Position (kb)
3060
3061 Strain fitness (log2 ratio)
-1
0
1
2 at 3059.722 kb on + strand, within HP15_2920 at 3059.752 kb on + strand, within HP15_2920 at 3059.778 kb on + strand, within HP15_2920 at 3059.786 kb on - strand, within HP15_2920 at 3059.831 kb on + strand, within HP15_2920 at 3059.831 kb on + strand, within HP15_2920 at 3059.837 kb on - strand, within HP15_2920 at 3059.865 kb on + strand, within HP15_2920 at 3059.901 kb on + strand, within HP15_2920 at 3059.941 kb on - strand, within HP15_2920 at 3059.956 kb on + strand, within HP15_2920 at 3060.006 kb on + strand, within HP15_2920 at 3060.014 kb on - strand, within HP15_2920 at 3060.053 kb on - strand, within HP15_2920 at 3060.133 kb on + strand at 3060.223 kb on - strand at 3060.276 kb on + strand, within HP15_2921 at 3060.354 kb on - strand, within HP15_2921 at 3060.490 kb on + strand, within HP15_2921 at 3060.497 kb on - strand, within HP15_2921 at 3060.565 kb on - strand, within HP15_2921 at 3060.584 kb on - strand, within HP15_2921 at 3060.682 kb on - strand at 3060.806 kb on + strand, within HP15_2922 at 3060.943 kb on - strand, within HP15_2922 at 3060.969 kb on - strand at 3061.048 kb on + strand at 3061.171 kb on - strand at 3061.229 kb on + strand at 3061.476 kb on - strand at 3061.507 kb on - strand at 3061.553 kb on - strand at 3061.569 kb on + strand at 3061.750 kb on + strand at 3061.870 kb on - strand at 3061.922 kb on - strand at 3061.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,059,722 + HP15_2920 0.44 -0.0 3,059,752 + HP15_2920 0.48 +1.7 3,059,778 + HP15_2920 0.52 +0.5 3,059,786 - HP15_2920 0.53 +0.3 3,059,831 + HP15_2920 0.59 -0.5 3,059,831 + HP15_2920 0.59 -0.2 3,059,837 - HP15_2920 0.59 -0.1 3,059,865 + HP15_2920 0.63 +0.5 3,059,901 + HP15_2920 0.68 +0.4 3,059,941 - HP15_2920 0.73 -1.5 3,059,956 + HP15_2920 0.75 +2.6 3,060,006 + HP15_2920 0.82 +1.7 3,060,014 - HP15_2920 0.83 +0.0 3,060,053 - HP15_2920 0.88 +1.0 3,060,133 + +1.8 3,060,223 - +0.9 3,060,276 + HP15_2921 0.16 -1.3 3,060,354 - HP15_2921 0.35 +0.9 3,060,490 + HP15_2921 0.67 -0.0 3,060,497 - HP15_2921 0.68 +0.9 3,060,565 - HP15_2921 0.84 +2.4 3,060,584 - HP15_2921 0.89 -0.0 3,060,682 - +0.3 3,060,806 + HP15_2922 0.40 -0.9 3,060,943 - HP15_2922 0.88 +0.1 3,060,969 - -0.3 3,061,048 + +0.2 3,061,171 - +1.3 3,061,229 + +0.5 3,061,476 - -1.6 3,061,507 - +0.2 3,061,553 - -0.0 3,061,569 + -0.0 3,061,750 + +0.3 3,061,870 - -0.1 3,061,922 - +0.3 3,061,968 - -0.0
Or see this region's nucleotide sequence