Strain Fitness in Marinobacter adhaerens HP15 around HP15_2922

Experiment: m.b. Ceftazidime 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2920 and HP15_2921 are separated by 68 nucleotidesHP15_2921 and HP15_2922 are separated by 62 nucleotidesHP15_2922 and HP15_2923 are separated by 590 nucleotidesHP15_2923 and HP15_2924 are separated by 259 nucleotides HP15_2920: HP15_2920 - amino acid ABC transporter, ATP-binding protein, at 3,059,393 to 3,060,139 _2920 HP15_2921: HP15_2921 - prophage CP4-57 regulatory, at 3,060,208 to 3,060,630 _2921 HP15_2922: HP15_2922 - hypothetical protein, at 3,060,693 to 3,060,977 _2922 HP15_2923: HP15_2923 - hypothetical protein, at 3,061,568 to 3,061,693 _2923 HP15_2924: HP15_2924 - conserved hypothetical protein, at 3,061,953 to 3,063,536 _2924 Position (kb) 3060 3061Strain fitness (log2 ratio) -1 0 1 2at 3059.722 kb on + strand, within HP15_2920at 3059.752 kb on + strand, within HP15_2920at 3059.778 kb on + strand, within HP15_2920at 3059.786 kb on - strand, within HP15_2920at 3059.831 kb on + strand, within HP15_2920at 3059.831 kb on + strand, within HP15_2920at 3059.837 kb on - strand, within HP15_2920at 3059.865 kb on + strand, within HP15_2920at 3059.901 kb on + strand, within HP15_2920at 3059.941 kb on - strand, within HP15_2920at 3059.956 kb on + strand, within HP15_2920at 3060.006 kb on + strand, within HP15_2920at 3060.014 kb on - strand, within HP15_2920at 3060.053 kb on - strand, within HP15_2920at 3060.133 kb on + strandat 3060.223 kb on - strandat 3060.276 kb on + strand, within HP15_2921at 3060.354 kb on - strand, within HP15_2921at 3060.490 kb on + strand, within HP15_2921at 3060.497 kb on - strand, within HP15_2921at 3060.565 kb on - strand, within HP15_2921at 3060.584 kb on - strand, within HP15_2921at 3060.682 kb on - strandat 3060.806 kb on + strand, within HP15_2922at 3060.943 kb on - strand, within HP15_2922at 3060.969 kb on - strandat 3061.048 kb on + strandat 3061.171 kb on - strandat 3061.229 kb on + strandat 3061.476 kb on - strandat 3061.507 kb on - strandat 3061.553 kb on - strandat 3061.569 kb on + strandat 3061.750 kb on + strandat 3061.870 kb on - strandat 3061.922 kb on - strandat 3061.968 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml
remove
3,059,722 + HP15_2920 0.44 -0.0
3,059,752 + HP15_2920 0.48 +1.7
3,059,778 + HP15_2920 0.52 +0.5
3,059,786 - HP15_2920 0.53 +0.3
3,059,831 + HP15_2920 0.59 -0.5
3,059,831 + HP15_2920 0.59 -0.2
3,059,837 - HP15_2920 0.59 -0.1
3,059,865 + HP15_2920 0.63 +0.5
3,059,901 + HP15_2920 0.68 +0.4
3,059,941 - HP15_2920 0.73 -1.5
3,059,956 + HP15_2920 0.75 +2.6
3,060,006 + HP15_2920 0.82 +1.7
3,060,014 - HP15_2920 0.83 +0.0
3,060,053 - HP15_2920 0.88 +1.0
3,060,133 + +1.8
3,060,223 - +0.9
3,060,276 + HP15_2921 0.16 -1.3
3,060,354 - HP15_2921 0.35 +0.9
3,060,490 + HP15_2921 0.67 -0.0
3,060,497 - HP15_2921 0.68 +0.9
3,060,565 - HP15_2921 0.84 +2.4
3,060,584 - HP15_2921 0.89 -0.0
3,060,682 - +0.3
3,060,806 + HP15_2922 0.40 -0.9
3,060,943 - HP15_2922 0.88 +0.1
3,060,969 - -0.3
3,061,048 + +0.2
3,061,171 - +1.3
3,061,229 + +0.5
3,061,476 - -1.6
3,061,507 - +0.2
3,061,553 - -0.0
3,061,569 + -0.0
3,061,750 + +0.3
3,061,870 - -0.1
3,061,922 - +0.3
3,061,968 - -0.0

Or see this region's nucleotide sequence