Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2905 and HP15_2906 are separated by 205 nucleotides HP15_2906 and HP15_2907 are separated by 69 nucleotides HP15_2907 and HP15_2908 overlap by 16 nucleotides
HP15_2905: HP15_2905 - lipoprotein-like protein, at 3,043,170 to 3,044,630
_2905
HP15_2906: HP15_2906 - conserved hypothetical protein, at 3,044,836 to 3,045,012
_2906
HP15_2907: HP15_2907 - extracellular solute-binding protein, family 3, at 3,045,082 to 3,045,864
_2907
HP15_2908: HP15_2908 - conserved hypothetical protein, at 3,045,849 to 3,046,205
_2908
Position (kb)
3044
3045
3046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3043.917 kb on + strand, within HP15_2905 at 3044.027 kb on - strand, within HP15_2905 at 3044.156 kb on + strand, within HP15_2905 at 3044.157 kb on - strand, within HP15_2905 at 3044.157 kb on - strand, within HP15_2905 at 3044.164 kb on + strand, within HP15_2905 at 3044.177 kb on - strand, within HP15_2905 at 3044.231 kb on + strand, within HP15_2905 at 3044.239 kb on - strand, within HP15_2905 at 3044.251 kb on - strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.353 kb on + strand, within HP15_2905 at 3044.516 kb on + strand at 3044.587 kb on + strand at 3044.898 kb on + strand, within HP15_2906 at 3045.018 kb on + strand at 3045.111 kb on + strand at 3045.123 kb on - strand at 3045.166 kb on - strand, within HP15_2907 at 3045.204 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.214 kb on + strand, within HP15_2907 at 3045.220 kb on - strand, within HP15_2907 at 3045.230 kb on - strand, within HP15_2907 at 3045.333 kb on - strand, within HP15_2907 at 3045.359 kb on + strand, within HP15_2907 at 3045.424 kb on - strand, within HP15_2907 at 3045.450 kb on + strand, within HP15_2907 at 3045.452 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.512 kb on + strand, within HP15_2907 at 3045.520 kb on - strand, within HP15_2907 at 3045.536 kb on + strand, within HP15_2907 at 3045.541 kb on + strand, within HP15_2907 at 3045.753 kb on + strand, within HP15_2907 at 3045.753 kb on + strand, within HP15_2907 at 3045.761 kb on - strand, within HP15_2907 at 3045.761 kb on - strand, within HP15_2907 at 3045.761 kb on - strand, within HP15_2907 at 3045.964 kb on - strand, within HP15_2908 at 3045.991 kb on + strand, within HP15_2908 at 3046.011 kb on + strand, within HP15_2908
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 3,043,917 + HP15_2905 0.51 -1.3 3,044,027 - HP15_2905 0.59 +0.3 3,044,156 + HP15_2905 0.67 +0.0 3,044,157 - HP15_2905 0.68 +0.3 3,044,157 - HP15_2905 0.68 -0.3 3,044,164 + HP15_2905 0.68 -0.4 3,044,177 - HP15_2905 0.69 +0.6 3,044,231 + HP15_2905 0.73 +0.3 3,044,239 - HP15_2905 0.73 +0.5 3,044,251 - HP15_2905 0.74 +0.5 3,044,343 + HP15_2905 0.80 +0.1 3,044,343 + HP15_2905 0.80 -0.3 3,044,343 + HP15_2905 0.80 -0.2 3,044,343 + HP15_2905 0.80 +0.1 3,044,353 + HP15_2905 0.81 +1.0 3,044,516 + +0.3 3,044,587 + -0.3 3,044,898 + HP15_2906 0.35 -0.9 3,045,018 + +0.7 3,045,111 + +0.1 3,045,123 - +0.6 3,045,166 - HP15_2907 0.11 +0.5 3,045,204 + HP15_2907 0.16 -0.5 3,045,206 + HP15_2907 0.16 +0.1 3,045,206 + HP15_2907 0.16 +1.4 3,045,206 + HP15_2907 0.16 +0.4 3,045,214 + HP15_2907 0.17 -1.2 3,045,220 - HP15_2907 0.18 -0.1 3,045,230 - HP15_2907 0.19 +0.0 3,045,333 - HP15_2907 0.32 -1.3 3,045,359 + HP15_2907 0.35 +0.7 3,045,424 - HP15_2907 0.44 +0.2 3,045,450 + HP15_2907 0.47 +1.8 3,045,452 - HP15_2907 0.47 +0.9 3,045,500 - HP15_2907 0.53 +0.5 3,045,500 - HP15_2907 0.53 +0.4 3,045,500 - HP15_2907 0.53 -1.0 3,045,512 + HP15_2907 0.55 +0.5 3,045,520 - HP15_2907 0.56 +0.1 3,045,536 + HP15_2907 0.58 -0.4 3,045,541 + HP15_2907 0.59 -1.8 3,045,753 + HP15_2907 0.86 +0.3 3,045,753 + HP15_2907 0.86 +1.0 3,045,761 - HP15_2907 0.87 +0.6 3,045,761 - HP15_2907 0.87 -0.1 3,045,761 - HP15_2907 0.87 +0.0 3,045,964 - HP15_2908 0.32 -0.1 3,045,991 + HP15_2908 0.40 +0.1 3,046,011 + HP15_2908 0.45 +0.8
Or see this region's nucleotide sequence