Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2841 and HP15_2842 are separated by 218 nucleotides HP15_2842 and HP15_2843 are separated by 430 nucleotides HP15_2843 and HP15_2844 are separated by 121 nucleotides
HP15_2841: HP15_2841 - conserved hypothetical protein, secreted, at 2,982,695 to 2,984,290
_2841
HP15_2842: HP15_2842 - transcriptional regulatory protein, at 2,984,509 to 2,985,225
_2842
HP15_2843: HP15_2843 - YHS domain protein, at 2,985,656 to 2,986,099
_2843
HP15_2844: HP15_2844 - hypothetical protein, at 2,986,221 to 2,986,388
_2844
Position (kb)
2984
2985
2986 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2983.735 kb on - strand, within HP15_2841 at 2983.760 kb on - strand, within HP15_2841 at 2983.764 kb on + strand, within HP15_2841 at 2983.769 kb on + strand, within HP15_2841 at 2983.788 kb on + strand, within HP15_2841 at 2983.796 kb on - strand, within HP15_2841 at 2983.942 kb on + strand, within HP15_2841 at 2983.942 kb on + strand, within HP15_2841 at 2983.950 kb on - strand, within HP15_2841 at 2983.950 kb on - strand, within HP15_2841 at 2983.961 kb on + strand, within HP15_2841 at 2983.969 kb on - strand, within HP15_2841 at 2983.969 kb on - strand, within HP15_2841 at 2984.064 kb on - strand, within HP15_2841 at 2984.134 kb on + strand at 2984.134 kb on + strand at 2984.137 kb on - strand at 2984.157 kb on - strand at 2984.180 kb on - strand at 2984.195 kb on + strand at 2984.203 kb on - strand at 2984.228 kb on - strand at 2984.296 kb on - strand at 2984.304 kb on - strand at 2984.312 kb on + strand at 2984.362 kb on - strand at 2984.411 kb on - strand at 2984.568 kb on - strand at 2984.678 kb on + strand, within HP15_2842 at 2984.686 kb on - strand, within HP15_2842 at 2985.017 kb on - strand, within HP15_2842 at 2985.025 kb on + strand, within HP15_2842 at 2985.033 kb on - strand, within HP15_2842 at 2985.033 kb on - strand, within HP15_2842 at 2985.286 kb on - strand at 2985.288 kb on - strand at 2985.350 kb on + strand at 2985.364 kb on + strand at 2985.364 kb on + strand at 2985.389 kb on - strand at 2985.425 kb on + strand at 2985.534 kb on - strand at 2985.539 kb on - strand at 2985.593 kb on + strand at 2985.609 kb on + strand at 2985.714 kb on - strand, within HP15_2843 at 2985.750 kb on + strand, within HP15_2843 at 2985.753 kb on - strand, within HP15_2843 at 2985.825 kb on + strand, within HP15_2843 at 2985.833 kb on - strand, within HP15_2843 at 2985.843 kb on - strand, within HP15_2843 at 2985.847 kb on - strand, within HP15_2843 at 2985.968 kb on + strand, within HP15_2843 at 2985.976 kb on - strand, within HP15_2843 at 2985.976 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2986.030 kb on - strand, within HP15_2843 at 2986.072 kb on + strand at 2986.096 kb on - strand at 2986.214 kb on - strand at 2986.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,983,735 - HP15_2841 0.65 -0.8 2,983,760 - HP15_2841 0.67 +1.5 2,983,764 + HP15_2841 0.67 +0.3 2,983,769 + HP15_2841 0.67 -0.5 2,983,788 + HP15_2841 0.68 -0.3 2,983,796 - HP15_2841 0.69 +0.7 2,983,942 + HP15_2841 0.78 -0.7 2,983,942 + HP15_2841 0.78 -0.9 2,983,950 - HP15_2841 0.79 +1.1 2,983,950 - HP15_2841 0.79 -0.4 2,983,961 + HP15_2841 0.79 -0.2 2,983,969 - HP15_2841 0.80 +0.0 2,983,969 - HP15_2841 0.80 +0.9 2,984,064 - HP15_2841 0.86 +0.4 2,984,134 + -0.7 2,984,134 + -0.7 2,984,137 - +0.6 2,984,157 - +0.7 2,984,180 - +0.1 2,984,195 + +0.2 2,984,203 - -1.9 2,984,228 - -1.4 2,984,296 - -0.7 2,984,304 - +2.7 2,984,312 + +0.1 2,984,362 - +0.2 2,984,411 - +0.6 2,984,568 - +0.4 2,984,678 + HP15_2842 0.24 -1.0 2,984,686 - HP15_2842 0.25 -0.2 2,985,017 - HP15_2842 0.71 -0.1 2,985,025 + HP15_2842 0.72 +0.2 2,985,033 - HP15_2842 0.73 -0.5 2,985,033 - HP15_2842 0.73 -1.9 2,985,286 - -0.3 2,985,288 - -0.6 2,985,350 + -0.0 2,985,364 + +2.7 2,985,364 + +0.1 2,985,389 - +0.2 2,985,425 + +0.6 2,985,534 - +0.1 2,985,539 - -0.3 2,985,593 + +0.1 2,985,609 + -1.3 2,985,714 - HP15_2843 0.13 +0.9 2,985,750 + HP15_2843 0.21 -0.9 2,985,753 - HP15_2843 0.22 -0.4 2,985,825 + HP15_2843 0.38 -0.5 2,985,833 - HP15_2843 0.40 +1.1 2,985,843 - HP15_2843 0.42 -0.1 2,985,847 - HP15_2843 0.43 +1.9 2,985,968 + HP15_2843 0.70 +1.7 2,985,976 - HP15_2843 0.72 -0.7 2,985,976 - HP15_2843 0.72 -0.4 2,985,981 - HP15_2843 0.73 -1.5 2,985,981 - HP15_2843 0.73 -0.4 2,985,981 - HP15_2843 0.73 +0.5 2,986,030 - HP15_2843 0.84 -0.5 2,986,072 + +0.1 2,986,096 - +0.1 2,986,214 - +0.1 2,986,214 - -0.5
Or see this region's nucleotide sequence