Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_286 and HP15_287 are separated by 22 nucleotides HP15_287 and HP15_288 are separated by 61 nucleotides HP15_288 and HP15_289 are separated by 224 nucleotides
HP15_286: HP15_286 - protein of unknown function YGGT, at 277,620 to 278,204
_286
HP15_287: HP15_287 - pyrroline-5-carboxylate reductase, at 278,227 to 279,060
_287
HP15_288: HP15_288 - alanine racemase domain protein, at 279,122 to 279,742
_288
HP15_289: HP15_289 - twitching motility protein PilT, at 279,967 to 281,001
_289
Position (kb) 279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.153 kb on + strand at 278.576 kb on + strand, within HP15_287 at 278.874 kb on + strand, within HP15_287 at 279.061 kb on + strand at 279.067 kb on + strand at 279.094 kb on + strand at 279.097 kb on - strand at 279.102 kb on - strand at 279.151 kb on + strand at 279.151 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.164 kb on - strand at 279.228 kb on + strand, within HP15_288 at 279.231 kb on - strand, within HP15_288 at 279.261 kb on - strand, within HP15_288 at 279.312 kb on + strand, within HP15_288 at 279.411 kb on - strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.623 kb on + strand, within HP15_288 at 279.654 kb on - strand, within HP15_288 at 279.739 kb on + strand at 279.739 kb on + strand at 279.811 kb on + strand at 279.824 kb on - strand at 280.133 kb on + strand, within HP15_289 at 280.251 kb on + strand, within HP15_289 at 280.273 kb on + strand, within HP15_289 at 280.330 kb on - strand, within HP15_289 at 280.337 kb on + strand, within HP15_289 at 280.345 kb on - strand, within HP15_289 at 280.364 kb on + strand, within HP15_289 at 280.536 kb on - strand, within HP15_289 at 280.576 kb on - strand, within HP15_289 at 280.578 kb on + strand, within HP15_289 at 280.640 kb on - strand, within HP15_289 at 280.694 kb on - strand, within HP15_289 at 280.732 kb on - strand, within HP15_289
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 278,153 + -0.7 278,576 + HP15_287 0.42 -0.7 278,874 + HP15_287 0.78 -0.0 279,061 + -0.8 279,067 + -0.9 279,094 + -0.4 279,097 - -1.7 279,102 - +0.7 279,151 + +1.0 279,151 + -0.0 279,159 - +0.2 279,159 - +0.9 279,164 - -1.0 279,228 + HP15_288 0.17 -0.5 279,231 - HP15_288 0.18 -1.4 279,261 - HP15_288 0.22 +1.1 279,312 + HP15_288 0.31 +0.5 279,411 - HP15_288 0.47 +0.0 279,510 + HP15_288 0.62 -0.1 279,510 + HP15_288 0.62 -0.2 279,623 + HP15_288 0.81 +1.8 279,654 - HP15_288 0.86 -1.9 279,739 + +0.9 279,739 + +1.7 279,811 + -0.3 279,824 - +1.1 280,133 + HP15_289 0.16 -0.0 280,251 + HP15_289 0.27 -0.3 280,273 + HP15_289 0.30 -0.1 280,330 - HP15_289 0.35 +0.8 280,337 + HP15_289 0.36 +0.1 280,345 - HP15_289 0.37 +0.5 280,364 + HP15_289 0.38 +0.4 280,536 - HP15_289 0.55 -0.1 280,576 - HP15_289 0.59 +0.3 280,578 + HP15_289 0.59 +1.9 280,640 - HP15_289 0.65 +0.6 280,694 - HP15_289 0.70 +0.6 280,732 - HP15_289 0.74 +0.6
Or see this region's nucleotide sequence