Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2820 and HP15_2821 are separated by 37 nucleotides HP15_2821 and HP15_2822 are separated by 113 nucleotides HP15_2822 and HP15_2823 overlap by 11 nucleotides HP15_2823 and HP15_2824 overlap by 18 nucleotides HP15_2824 and HP15_2825 are separated by 8 nucleotides HP15_2825 and HP15_2826 are separated by 314 nucleotides
HP15_2820: HP15_2820 - phosphate: Na+ symporter, at 2,965,606 to 2,967,414
_2820
HP15_2821: HP15_2821 - hypothetical protein, at 2,967,452 to 2,967,700
_2821
HP15_2822: HP15_2822 - MutT/nudix family protein, at 2,967,814 to 2,968,296
_2822
HP15_2823: HP15_2823 - Zn-dependent hydrolase of the beta-lactamase fold, at 2,968,286 to 2,969,311
_2823
HP15_2824: HP15_2824 - conserved hypothetical protein, membrane, at 2,969,294 to 2,969,779
_2824
HP15_2825: HP15_2825 - conserved hypothetical protein, at 2,969,788 to 2,969,991
_2825
HP15_2826: HP15_2826 - conserved hypothetical protein, at 2,970,306 to 2,971,220
_2826
Position (kb)
2968
2969
2970 Strain fitness (log2 ratio)
-2
-1
0
1 at 2967.330 kb on + strand at 2967.338 kb on - strand at 2967.370 kb on - strand at 2967.375 kb on - strand at 2967.402 kb on + strand at 2967.402 kb on + strand at 2967.418 kb on + strand at 2967.429 kb on + strand at 2967.657 kb on - strand, within HP15_2821 at 2967.673 kb on + strand, within HP15_2821 at 2967.685 kb on + strand at 2967.693 kb on - strand at 2967.693 kb on - strand at 2967.693 kb on - strand at 2967.773 kb on - strand at 2967.845 kb on - strand at 2967.857 kb on - strand at 2968.037 kb on + strand, within HP15_2822 at 2968.045 kb on - strand, within HP15_2822 at 2968.045 kb on - strand, within HP15_2822 at 2968.061 kb on + strand, within HP15_2822 at 2968.091 kb on - strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.501 kb on + strand, within HP15_2823 at 2968.504 kb on - strand, within HP15_2823 at 2968.509 kb on - strand, within HP15_2823 at 2968.511 kb on + strand, within HP15_2823 at 2968.595 kb on - strand, within HP15_2823 at 2968.609 kb on + strand, within HP15_2823 at 2968.610 kb on - strand, within HP15_2823 at 2968.791 kb on + strand, within HP15_2823 at 2968.791 kb on + strand, within HP15_2823 at 2968.822 kb on + strand, within HP15_2823 at 2968.842 kb on + strand, within HP15_2823 at 2968.850 kb on + strand, within HP15_2823 at 2968.865 kb on + strand, within HP15_2823 at 2968.918 kb on - strand, within HP15_2823 at 2969.005 kb on + strand, within HP15_2823 at 2969.050 kb on - strand, within HP15_2823 at 2969.118 kb on - strand, within HP15_2823 at 2969.143 kb on - strand, within HP15_2823 at 2969.148 kb on - strand, within HP15_2823 at 2969.151 kb on + strand, within HP15_2823 at 2969.199 kb on + strand, within HP15_2823 at 2969.254 kb on - strand at 2969.259 kb on - strand at 2969.333 kb on + strand at 2969.341 kb on - strand at 2969.359 kb on + strand, within HP15_2824 at 2969.359 kb on + strand, within HP15_2824 at 2969.364 kb on + strand, within HP15_2824 at 2969.372 kb on + strand, within HP15_2824 at 2969.380 kb on - strand, within HP15_2824 at 2969.515 kb on - strand, within HP15_2824 at 2969.680 kb on + strand, within HP15_2824 at 2969.691 kb on + strand, within HP15_2824 at 2969.699 kb on - strand, within HP15_2824 at 2969.728 kb on + strand, within HP15_2824 at 2969.731 kb on - strand at 2969.813 kb on + strand, within HP15_2825 at 2969.846 kb on + strand, within HP15_2825 at 2969.854 kb on - strand, within HP15_2825 at 2969.931 kb on + strand, within HP15_2825 at 2969.948 kb on + strand, within HP15_2825 at 2970.024 kb on + strand at 2970.090 kb on - strand at 2970.104 kb on - strand at 2970.112 kb on + strand at 2970.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,967,330 + +0.5 2,967,338 - +1.2 2,967,370 - -0.9 2,967,375 - +0.1 2,967,402 + -0.2 2,967,402 + +0.2 2,967,418 + +0.5 2,967,429 + -0.1 2,967,657 - HP15_2821 0.82 -0.2 2,967,673 + HP15_2821 0.89 +0.7 2,967,685 + +0.1 2,967,693 - +0.6 2,967,693 - -1.1 2,967,693 - +0.1 2,967,773 - +0.1 2,967,845 - +1.0 2,967,857 - +1.0 2,968,037 + HP15_2822 0.46 -2.1 2,968,045 - HP15_2822 0.48 +0.6 2,968,045 - HP15_2822 0.48 +0.1 2,968,061 + HP15_2822 0.51 +0.6 2,968,091 - HP15_2822 0.57 +0.1 2,968,165 + HP15_2822 0.73 +0.5 2,968,165 + HP15_2822 0.73 -0.1 2,968,165 + HP15_2822 0.73 -0.9 2,968,165 + HP15_2822 0.73 +0.9 2,968,173 - HP15_2822 0.74 +0.2 2,968,173 - HP15_2822 0.74 +0.1 2,968,173 - HP15_2822 0.74 +0.3 2,968,173 - HP15_2822 0.74 -0.1 2,968,501 + HP15_2823 0.21 -1.2 2,968,504 - HP15_2823 0.21 +0.1 2,968,509 - HP15_2823 0.22 -0.1 2,968,511 + HP15_2823 0.22 -0.4 2,968,595 - HP15_2823 0.30 +0.0 2,968,609 + HP15_2823 0.31 -1.9 2,968,610 - HP15_2823 0.32 -0.2 2,968,791 + HP15_2823 0.49 +0.1 2,968,791 + HP15_2823 0.49 -1.1 2,968,822 + HP15_2823 0.52 -0.8 2,968,842 + HP15_2823 0.54 -1.0 2,968,850 + HP15_2823 0.55 +0.5 2,968,865 + HP15_2823 0.56 +1.1 2,968,918 - HP15_2823 0.62 +0.1 2,969,005 + HP15_2823 0.70 -0.3 2,969,050 - HP15_2823 0.74 +0.2 2,969,118 - HP15_2823 0.81 -0.6 2,969,143 - HP15_2823 0.84 -1.1 2,969,148 - HP15_2823 0.84 -0.7 2,969,151 + HP15_2823 0.84 -1.1 2,969,199 + HP15_2823 0.89 +0.5 2,969,254 - -0.6 2,969,259 - +0.8 2,969,333 + +0.3 2,969,341 - -0.4 2,969,359 + HP15_2824 0.13 -0.1 2,969,359 + HP15_2824 0.13 +0.5 2,969,364 + HP15_2824 0.14 +0.2 2,969,372 + HP15_2824 0.16 +0.2 2,969,380 - HP15_2824 0.18 +1.6 2,969,515 - HP15_2824 0.45 +0.1 2,969,680 + HP15_2824 0.79 -0.2 2,969,691 + HP15_2824 0.82 -0.2 2,969,699 - HP15_2824 0.83 +0.4 2,969,728 + HP15_2824 0.89 +0.5 2,969,731 - +0.4 2,969,813 + HP15_2825 0.12 -0.1 2,969,846 + HP15_2825 0.28 +0.9 2,969,854 - HP15_2825 0.32 -0.5 2,969,931 + HP15_2825 0.70 +1.5 2,969,948 + HP15_2825 0.78 +0.2 2,970,024 + -0.1 2,970,090 - -0.3 2,970,104 - -1.2 2,970,112 + +0.1 2,970,112 + +0.1
Or see this region's nucleotide sequence