Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2766 and HP15_2767 are separated by 168 nucleotides HP15_2767 and HP15_2768 are separated by 49 nucleotides
HP15_2766: HP15_2766 - sensory box/GGDEF family protein, at 2,918,486 to 2,919,520
_2766
HP15_2767: HP15_2767 - OmpA family protein-like protein, at 2,919,689 to 2,920,297
_2767
HP15_2768: HP15_2768 - membrane protein, at 2,920,347 to 2,922,854
_2768
Position (kb)
2919
2920
2921 Strain fitness (log2 ratio)
-1
0
1 at 2918.727 kb on + strand, within HP15_2766 at 2918.896 kb on + strand, within HP15_2766 at 2919.042 kb on - strand, within HP15_2766 at 2919.101 kb on + strand, within HP15_2766 at 2919.146 kb on + strand, within HP15_2766 at 2919.153 kb on + strand, within HP15_2766 at 2919.417 kb on + strand at 2919.436 kb on - strand at 2919.436 kb on - strand at 2919.484 kb on - strand at 2919.583 kb on - strand at 2919.750 kb on + strand, within HP15_2767 at 2919.758 kb on + strand, within HP15_2767 at 2919.766 kb on - strand, within HP15_2767 at 2919.947 kb on - strand, within HP15_2767 at 2919.990 kb on - strand, within HP15_2767 at 2920.048 kb on - strand, within HP15_2767 at 2920.133 kb on - strand, within HP15_2767 at 2920.230 kb on + strand, within HP15_2767 at 2920.268 kb on + strand at 2920.277 kb on - strand at 2920.430 kb on - strand at 2920.435 kb on - strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.454 kb on - strand at 2920.633 kb on - strand, within HP15_2768 at 2920.773 kb on - strand, within HP15_2768 at 2920.808 kb on - strand, within HP15_2768 at 2920.971 kb on - strand, within HP15_2768 at 2920.971 kb on - strand, within HP15_2768 at 2920.989 kb on + strand, within HP15_2768 at 2920.997 kb on - strand, within HP15_2768 at 2921.016 kb on - strand, within HP15_2768 at 2921.023 kb on + strand, within HP15_2768 at 2921.175 kb on - strand, within HP15_2768 at 2921.266 kb on + strand, within HP15_2768 at 2921.281 kb on + strand, within HP15_2768 at 2921.286 kb on + strand, within HP15_2768 at 2921.286 kb on + strand, within HP15_2768 at 2921.294 kb on - strand, within HP15_2768 at 2921.294 kb on - strand, within HP15_2768 at 2921.294 kb on - strand, within HP15_2768
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,918,727 + HP15_2766 0.23 -1.2 2,918,896 + HP15_2766 0.40 -0.3 2,919,042 - HP15_2766 0.54 +0.7 2,919,101 + HP15_2766 0.59 +1.4 2,919,146 + HP15_2766 0.64 +0.5 2,919,153 + HP15_2766 0.64 +0.1 2,919,417 + -1.4 2,919,436 - -0.5 2,919,436 - -0.7 2,919,484 - +1.1 2,919,583 - +0.6 2,919,750 + HP15_2767 0.10 -0.4 2,919,758 + HP15_2767 0.11 +0.9 2,919,766 - HP15_2767 0.13 +0.9 2,919,947 - HP15_2767 0.42 -0.7 2,919,990 - HP15_2767 0.49 -1.2 2,920,048 - HP15_2767 0.59 -0.7 2,920,133 - HP15_2767 0.73 +0.3 2,920,230 + HP15_2767 0.89 -0.7 2,920,268 + -0.6 2,920,277 - +0.1 2,920,430 - +0.9 2,920,435 - +0.1 2,920,446 + -0.3 2,920,446 + +1.5 2,920,446 + +0.9 2,920,446 + +0.1 2,920,454 - -0.3 2,920,633 - HP15_2768 0.11 +0.5 2,920,773 - HP15_2768 0.17 -0.1 2,920,808 - HP15_2768 0.18 -0.1 2,920,971 - HP15_2768 0.25 +0.8 2,920,971 - HP15_2768 0.25 +0.7 2,920,989 + HP15_2768 0.26 -1.2 2,920,997 - HP15_2768 0.26 -0.1 2,921,016 - HP15_2768 0.27 +0.9 2,921,023 + HP15_2768 0.27 -0.0 2,921,175 - HP15_2768 0.33 +0.3 2,921,266 + HP15_2768 0.37 +1.3 2,921,281 + HP15_2768 0.37 -0.2 2,921,286 + HP15_2768 0.37 -0.0 2,921,286 + HP15_2768 0.37 -1.2 2,921,294 - HP15_2768 0.38 +1.1 2,921,294 - HP15_2768 0.38 -0.4 2,921,294 - HP15_2768 0.38 +1.2
Or see this region's nucleotide sequence