Experiment: m.b. Ceftazidime 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2756 and HP15_2757 are separated by 74 nucleotides HP15_2757 and HP15_2758 are separated by 133 nucleotides HP15_2758 and HP15_2759 are separated by 7 nucleotides HP15_2759 and HP15_2761 are separated by 171 nucleotides
HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314
_2756
HP15_2757: HP15_2757 - conserved hypothetical protein, at 2,912,389 to 2,912,712
_2757
HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310
_2758
HP15_2759: HP15_2759 - conserved hypothetical protein, at 2,913,318 to 2,913,857
_2759
HP15_2761: HP15_2761 - transcriptional regulator, GntR family with aminotransferase domain protein, at 2,914,029 to 2,915,462
_2761
Position (kb)
2912
2913
2914 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2911.921 kb on - strand, within HP15_2756 at 2911.949 kb on - strand, within HP15_2756 at 2911.987 kb on + strand, within HP15_2756 at 2911.987 kb on + strand, within HP15_2756 at 2912.059 kb on - strand, within HP15_2756 at 2912.097 kb on - strand, within HP15_2756 at 2912.097 kb on - strand, within HP15_2756 at 2912.104 kb on - strand, within HP15_2756 at 2912.159 kb on + strand at 2912.172 kb on - strand at 2912.194 kb on - strand at 2912.195 kb on - strand at 2912.217 kb on - strand at 2912.247 kb on - strand at 2912.256 kb on + strand at 2912.361 kb on + strand at 2912.372 kb on + strand at 2912.372 kb on + strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.380 kb on - strand at 2912.429 kb on - strand, within HP15_2757 at 2912.454 kb on + strand, within HP15_2757 at 2912.497 kb on + strand, within HP15_2757 at 2912.505 kb on - strand, within HP15_2757 at 2912.505 kb on - strand, within HP15_2757 at 2912.535 kb on + strand, within HP15_2757 at 2912.741 kb on + strand at 2912.842 kb on - strand at 2912.844 kb on - strand at 2912.937 kb on + strand, within HP15_2758 at 2912.998 kb on + strand, within HP15_2758 at 2913.060 kb on + strand, within HP15_2758 at 2913.235 kb on + strand, within HP15_2758 at 2913.293 kb on + strand at 2913.312 kb on - strand at 2913.312 kb on - strand at 2913.332 kb on + strand at 2913.340 kb on - strand at 2913.398 kb on - strand, within HP15_2759 at 2913.432 kb on - strand, within HP15_2759 at 2913.540 kb on + strand, within HP15_2759 at 2913.589 kb on + strand, within HP15_2759 at 2913.747 kb on + strand, within HP15_2759 at 2913.869 kb on + strand at 2913.937 kb on + strand at 2914.044 kb on + strand at 2914.130 kb on - strand at 2914.205 kb on + strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.032 mg/ml remove 2,911,921 - HP15_2756 0.81 +0.9 2,911,949 - HP15_2756 0.82 +0.3 2,911,987 + HP15_2756 0.84 -0.2 2,911,987 + HP15_2756 0.84 +0.3 2,912,059 - HP15_2756 0.87 +0.6 2,912,097 - HP15_2756 0.89 +0.2 2,912,097 - HP15_2756 0.89 -0.8 2,912,104 - HP15_2756 0.90 +0.5 2,912,159 + +0.0 2,912,172 - +0.3 2,912,194 - +0.3 2,912,195 - -0.3 2,912,217 - +0.2 2,912,247 - +0.8 2,912,256 + -0.5 2,912,361 + +0.7 2,912,372 + +1.1 2,912,372 + -0.5 2,912,380 - +1.1 2,912,380 - +0.1 2,912,380 - -0.1 2,912,380 - -0.3 2,912,380 - +2.0 2,912,429 - HP15_2757 0.12 -0.1 2,912,454 + HP15_2757 0.20 +0.4 2,912,497 + HP15_2757 0.33 -0.3 2,912,505 - HP15_2757 0.36 +0.4 2,912,505 - HP15_2757 0.36 -0.0 2,912,535 + HP15_2757 0.45 +2.6 2,912,741 + +0.3 2,912,842 - -0.3 2,912,844 - -0.6 2,912,937 + HP15_2758 0.20 -1.2 2,912,998 + HP15_2758 0.33 +0.3 2,913,060 + HP15_2758 0.46 +0.2 2,913,235 + HP15_2758 0.84 -2.4 2,913,293 + +0.2 2,913,312 - +0.3 2,913,312 - -0.4 2,913,332 + -0.2 2,913,340 - +0.3 2,913,398 - HP15_2759 0.15 -0.1 2,913,432 - HP15_2759 0.21 +0.0 2,913,540 + HP15_2759 0.41 +0.4 2,913,589 + HP15_2759 0.50 -0.6 2,913,747 + HP15_2759 0.79 -0.2 2,913,869 + -0.2 2,913,937 + +1.3 2,914,044 + -0.2 2,914,130 - +0.3 2,914,205 + HP15_2761 0.12 +0.2 2,914,213 - HP15_2761 0.13 +0.3 2,914,213 - HP15_2761 0.13 +0.1 2,914,213 - HP15_2761 0.13 +0.6
Or see this region's nucleotide sequence